PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000356.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 268aa    MW: 30024 Da    PI: 9.5851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000356.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10961361055
                                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  FANhyb_rscf00000356.1.g00010.1  96 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 136
                                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.89486135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1487151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1391145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1192141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-1095140No hitNo description
PfamPF000101.5E-796136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKRSQSTDNV QMNKRSKAKK SLRVTTSNIE GGNAGPNRQT SSSCCSEDDS IAYKEVSGGY  60
SPTSSLSPKE AVVPDLNGKS RARRGSASDP QSLYARKRRE KINERLRVLQ NLVPNGTKVD  120
ISTMLEEAVH YVKFLQLQIK LLSSDDMWMY APICYNGMDL GLDRKLTTPS QPQIRSREIQ  180
KNNQDQEKHY YREEEGSRIQ LSENVLCLAK EAACSLVRKP ACPKPAIAEL NSLLIQVNFT  240
SASNDHKRGT IKLQDYKATY CLVQISDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319KRSKAKK
295100RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459687.11e-101PREDICTED: transcription factor bHLH54
TrEMBLA0A2P6PLD54e-97A0A2P6PLD5_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292132.11e-104(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-57bHLH family protein