PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000348.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 603aa    MW: 67752.6 Da    PI: 7.7648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000348.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15355396346
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                      +T+eE+e +++++k  G++ W++Ia+ ++ gRt++++k++w++
  FANhyb_rscf00000348.1.g00004.1 355 TFTPEEEEHIINLHKAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 396
                                     79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007025.0E-5564261IPR006620Prolyl 4-hydroxylase, alpha subunit
PROSITE profilePS5147113.125140262IPR005123Oxoglutarate/iron-dependent dioxygenase
PfamPF136401.3E-20144261IPR005123Oxoglutarate/iron-dependent dioxygenase
SMARTSM002543.4E-4276315IPR003582ShKT domain
PROSITE profilePS516708.319277317IPR003582ShKT domain
Gene3DG3DSA:1.10.10.601.5E-10329360IPR009057Homeodomain-like
SuperFamilySSF466891.28E-22333406IPR009057Homeodomain-like
PROSITE profilePS500904.286333347IPR017877Myb-like domain
PROSITE profilePS5129423.32348402IPR017930Myb domain
SMARTSM007178.0E-14352400IPR001005SANT/Myb domain
PfamPF002496.9E-14355396IPR001005SANT/Myb domain
CDDcd001671.82E-10355398No hitNo description
Gene3DG3DSA:1.10.10.601.2E-20361399IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDSRLLIALS LCFFFLLPHV SHSRARVKNL IDLKQTVGSV IRMKRGPSSA TFDPTHVSQL  60
SWKPRAFLYK GFLTEEECDH LINMAKDKLE VSMLADNESG KSIKSEVRTS SGMFLAKAQD  120
EVVANIETKI AAWTFLPIEN GEEMQILHYE NGQKYEPHYD YFHDKANQEL GGHRVATVLM  180
YLSNVEKGGE TVFPQAQVKT VEAKDEVLSD CAKNGYSVKP FKGDALLFFS LLPNATTDPN  240
SLHGSCPVIK GEKWSATKWI HVRSFEKSLK KALSGECTDE NANCATWAKA GECEKNPTYM  300
VGSADLPGFC RKSCKMNFPS TFIMFLHKKA GLNRCGKSCR LRWTNYLRPD LKHDTFTPEE  360
EEHIINLHKA IGSRWSLIAK QLPGRTDNDV KNYWNTKLKK KLSKIGIDPV THKPISHVLS  420
DFGNITCLPH HIGDHLEPSF NNLNTNPAFV SESDPSSGIT GLAYTNMVMM KPIMESHDHS  480
HTSTLPFGFL SQFQAINQDD NVSLPPHFLN EVTSSCSSSS SPPATDLLSP QCHASAQVTH  540
QLLLPLIGVS FFFRILFHPQ INPSKKKCFM DLYHHQPILQ LVMEFSPNHL KLDLHQPLME  600
VQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gze_A5e-825726214218Predicted protein
3gze_B5e-825726214218Predicted protein
3gze_C5e-825726214218Predicted protein
3gze_D5e-825726214218Predicted protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302371.10.0PREDICTED: probable prolyl 4-hydroxylase 7
SwissprotQ8L9701e-156P4H7_ARATH; Probable prolyl 4-hydroxylase 7
TrEMBLA0A498HEC50.0A0A498HEC5_MALDO; Uncharacterized protein
STRINGXP_004302371.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF847034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-46MYB family protein