PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000334.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 275aa    MW: 31356.3 Da    PI: 8.233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000334.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.19.7e-1221142128
                             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknrat 78 
                                       G+ F+Ptd  l+  +L ++++g++l++ + +++ d++   P d+  +  +++e++e+ fF ++          +r  
  FANhyb_rscf00000334.1.g00003.1   2 FEGYIFRPTDTRLIRTFLVPRIRGQDLPM-NDFARRDVFADPPLDIAiAeGYSEEKQEIDFFNQT----------SR-- 67 
                                     5799*************************.569999**********8432333344466666554..........44.. PP

                             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +s++Wk t +++++++++++++g k+   fy+  ++ g+  +W ++ y++
  FANhyb_rscf00000334.1.g00003.1  68 RSSIWKPTHRSEDLIRSGDTVIGRKNK--FYH-AENPGKTVKWYLDKYTA 114
                                     3679************89999999986..563.45556899*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.4571129IPR003441NAC domain
SuperFamilySSF1019413.4E-133119IPR003441NAC domain
PfamPF023659.9E-64113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MFEGYIFRPT DTRLIRTFLV PRIRGQDLPM NDFARRDVFA DPPLDIAIAE GYSEEKQEID  60
FFNQTSRRSS IWKPTHRSED LIRSGDTVIG RKNKFYHAEN PGKTVKWYLD KYTAEGENSE  120
VAVYKLHTGR DPAPSLYPAE AQNQNLTVPP PQSGSSLLPV LPCNPPLLQQ AYSQWNHSLL  180
QHNRSSPLLQ QAYSLWNPMD LQAFSQWNES LQHNGSSALP LPEWNPPHFN TMGYHHSLSL  240
KGTPHFFSKT TPKQVFLQIG PSLVFSSKYC PATSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470792.11e-143PREDICTED: uncharacterized protein LOC105353406
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3406922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.16e-07NAC 014