PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000331.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 32257.7 Da PI: 4.618

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000331.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4.1e-18	41	94	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk+l L+ rqV +WFqNrRa+ k FANhyb_rscf00000331.1.g00001.1 41 KKRRLTVDQVQFLEKNFELENKLEPDRKVQLAKELCLEPRQVAIWFQNRRARFK 94 56689***********************************************98 PP
2	HD-ZIP_I/II	126.5	1.1e-40	41	131	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 kkrrl+ +qv++LE++Fe e+kLep+rKv+la+eL l+prqva+WFqnrRAR+ktkqlEkdy++L+++yd+lk+++++L FANhyb_rscf00000331.1.g00001.1 41 KKRRLTVDQVQFLEKNFELENKLEPDRKVQLAKELCLEPRQVAIWFQNRRARFKTKQLEKDYDSLRASYDKLKADHDNL 119 9**************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelk 92 +k++ +L++e++ FANhyb_rscf00000331.1.g00001.1 120 RKQNGNLKNEID 131 ******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-19	28	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.261	36	96	IPR001356	Homeobox domain
SMART	SM00389	1.6E-14	38	100	IPR001356	Homeobox domain
CDD	cd00086	6.20E-16	39	97	No hit	No description
Pfam	PF00046	1.9E-15	41	94	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.9E-18	43	103	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.7E-15	96	137	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVNFKNVSGG DSMNKSLFHP IDKEENGDDD YEGSHLHQPG KKRRLTVDQV QFLEKNFELE 60 NKLEPDRKVQ LAKELCLEPR QVAIWFQNRR ARFKTKQLEK DYDSLRASYD KLKADHDNLR 120 KQNGNLKNEI DFLKDKLLLR DQGKGNLESN DEGINSPKMD IQVAIPNNAA DVYVPIMVCK 180 QEDASSAKSD VFDSDSPHCT ENLSLLLEPS TTADSSHGFE PADHSDFSQD NEDDNSLTRS 240 FLHLPPPCLL KLEDICYDDP PAISSNFELN PVEDQHYGFW PY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	96	RRARFKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297340.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5
Swissprot	Q02283	1e-40	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A2P6R3B6	0.0	A0A2P6R3B6_ROSCH; Putative transcription factor Homobox-WOX family
STRING	XP_004297340.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	6e-34	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]