PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000296.1.g00007.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 278aa    MW: 31746.6 Da    PI: 10.5266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000296.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-13127173147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r++W+ eE+ ++++++++lG+g+W+ I+++  ++R++ q+ s+ qky
  FANhyb_rscf00000296.1.g00007.1 127 RMAWSLEEHWKFLEGIEKLGKGDWRGISKHYVTTRSPTQISSHAQKY 173
                                     789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.977520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.468122178IPR017930Myb domain
TIGRFAMsTIGR015577.2E-15125176IPR006447Myb domain, plants
SuperFamilySSF466891.79E-15125179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-10126172IPR009057Homeodomain-like
SMARTSM007171.1E-8126176IPR001005SANT/Myb domain
PfamPF002491.5E-11127173IPR001005SANT/Myb domain
CDDcd001672.56E-7129174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTRTCSKCGN KGHNSRTCRS TTQCYWMQQM NKPFERRYRN NSTLRLFGVQ LDRHDLSSSP  60
SSSLSATSTK VIKRQRWRKD YYNSLASSSP HFTSFLSGYQ ANKCTNRHDQ ISRADNGGLQ  120
ETNYNKRMAW SLEEHWKFLE GIEKLGKGDW RGISKHYVTT RSPTQISSHA QKYFLRLQNN  180
ITTNATATID NLHKKRRRGR PPLFDVGEDK LVSPRQQIGI IANNPNTEVP VNNPYERWPA  240
VHNSRPLLID TNLKNVSSSQ SAAAEGEGLD LELKLATG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292789.10.0PREDICTED: myb-like protein J
STRINGXP_004292789.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3404922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-29MYB_related family protein