PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000296.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 484aa    MW: 53207.4 Da    PI: 7.1019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000296.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31130187260
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ +++++ei+Y+g+H+h+k
  FANhyb_rscf00000296.1.g00003.1 130 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGHITEIIYKGTHDHPK 187
                                     8****************************************.***************85 PP
2WRKY106.61.3e-33306364159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  FANhyb_rscf00000296.1.g00003.1 306 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 364
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.01E-24128188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-26128188IPR003657WRKY domain
SMARTSM007748.2E-33129187IPR003657WRKY domain
PROSITE profilePS5081122.022130188IPR003657WRKY domain
PfamPF031068.8E-24130186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-38291366IPR003657WRKY domain
SuperFamilySSF1182901.83E-29298366IPR003657WRKY domain
PROSITE profilePS5081138.825301366IPR003657WRKY domain
SMARTSM007743.1E-39306365IPR003657WRKY domain
PfamPF031062.7E-26307364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVYGTASSTY SGTMVCSDER NSGSFEFKPH SRLNMVTTDY DHHSNEQAVQ VQGQGQGLSQ  60
SLVSPPLLKS EMAGSSNQSI LSAPVHMVSS GPSAHVEGDA DDTSQRGNPN SGVQTSQLDH  120
KGSGPSVSSD DGYNWRKYGQ KHVKGSEFPR SYYKCTHPNC EVKKLFERSH EGHITEIIYK  180
GTHDHPKPQP SRRYNTGAAM MNVQEERSDK ALSLTGRDDK SSSMYGQMSS TNEPSSTPEL  240
SPVRGNDGSG EGTGSLATRI LDEVDDEDPF SKRRRMDVGG IDVTPIVKPI REPRVVVQTL  300
SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP KAVITTYEGK  360
HNHDVPTART SSHDTSGPTT MNAPSRIRTE ENDTISLDLG VGMTSASENR SNNHLQMHSE  420
LAERQTHPSS NFKATPSYYG VLNSGMNQYG SRESPSESRS IEIPPLNHSS YPYPQNMGRV  480
LTGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37110366577Probable WRKY transcription factor 4
2lex_A4e-37110366577Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461112.10.0PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-171WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2P6QD390.0A0A2P6QD39_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294460.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-166WRKY family protein