PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000234.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 561aa    MW: 63626.4 Da    PI: 6.0077
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000234.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.55.7e-31369453186
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW+++ev aLi +r+++e ++++   k+plWe+vs+ m++ g++rs k+Ckekwen+nk+++k+k++ kkr s++s+tc
  FANhyb_rscf00000234.1.g00001.1 369 RWPQSEVEALILVRSNIEPKFQEPGHKGPLWEQVSASMASLGYRRSGKRCKEKWENINKYFRKTKDSPKKR-SQQSKTC 446
                                     8*********************************************************************8.78889** PP

                        trihelix  80 pyfdqle 86 
                                     +yf+ql+
  FANhyb_rscf00000234.1.g00001.1 447 SYFNQLD 453
                                     ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.946362426IPR017877Myb-like domain
PfamPF138376.6E-21368455No hitNo description
CDDcd122032.48E-26368433No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MQSNFEIADL PSQQHFMDTN SSSPVFFNPQ NQTYPSFHQQ QLSHHLVHPI PITHELFQGL  60
HPQPEQEHQS GTAHWQMSPL NFKLALNENS ASGQAALLDQ NNPLFLQSRQ QNLGFKSWQP  120
QEYSTRKETL LPNETEGMKQ KQEIQGEMCK ELEGKYRLYG ELEAIYSLAN TGDVNNKQTG  180
SGSALTNENS PKNVDLVTPV PFGGAHGLNA GPAAIDGVDD GSEASIEEEV SYRNVQKRKR  240
KRRMKEQMSS STARFFEGLV KRVMDHQESL HNRYLALIEK MDRERREREA AWRMQEAEKH  300
KRAAIAQLHE QALASKRESL IVSYIEKITG QKVNIPSREI PSLLQCDYSN GAREGELTPA  360
KADHETNSRW PQSEVEALIL VRSNIEPKFQ EPGHKGPLWE QVSASMASLG YRRSGKRCKE  420
KWENINKYFR KTKDSPKKRS QQSKTCSYFN QLDQLYSRTP ITNPPSSSYC SSNPAVSIER  480
QGYSELLQAV ITGSDTGVSE NLSSGNFELL SEMGSNRLDF DGFTNGKVEH LRENHGKEME  540
NHEDDGSMEE EEDIHGDDSD E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236242KRKRKRR
2236243KRKRKRRM
3237242RKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467225.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A2P6Q1N00.0A0A2P6Q1N0_ROSCH; Putative transcription factor MYB family
STRINGXP_004305610.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-39Trihelix family protein