PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000230.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 479aa    MW: 52359.6 Da    PI: 5.5865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000230.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-121473148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48
                                    +grWT+eEd+ l+++++  G g+W++ ++               + R++k+c++rw +yl
  FANhyb_rscf00000230.1.g00005.1 14 KGRWTAEEDQTLINYIRANGEGSWRSLPKNAAvqflqvqsidrgLLRCGKSCRLRWINYL 73
                                    79*****************************99***********9*************97 PP
2Myb_DNA-binding51.52.3e-1679124148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+ T++E+++++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  FANhyb_rscf00000230.1.g00005.1  79 RGNITPQEEDIIIKLHASLGNR-WSLIASQLP-GRTDNEIKNYWNSHL 124
                                     7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-20576IPR009057Homeodomain-like
PROSITE profilePS5129411.994973IPR017930Myb domain
SuperFamilySSF466891.56E-2511120IPR009057Homeodomain-like
SMARTSM007172.9E-91375IPR001005SANT/Myb domain
PfamPF002493.0E-111473IPR001005SANT/Myb domain
CDDcd001678.90E-71673No hitNo description
PROSITE profilePS5129425.80174128IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2577128IPR009057Homeodomain-like
SMARTSM007173.4E-1678126IPR001005SANT/Myb domain
PfamPF002498.6E-1579124IPR001005SANT/Myb domain
CDDcd001677.71E-1183124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDQTLINYIR ANGEGSWRSL PKNAAVQFLQ VQSIDRGLLR  60
CGKSCRLRWI NYLRADLKRG NITPQEEDII IKLHASLGNR WSLIASQLPG RTDNEIKNYW  120
NSHLSRKIDA FRRPINKIHM PSASAAAAAS SSSTTTTAAD EINMAMKLGP PSSKRRGRGG  180
RTSRWAMKKN KVTYASTAIN HHLDSCTHNH DDKSATMTSS SSPPPPSAAA AAVAAGTGQK  240
ETQALVGGGP SDGSAAGKLD DGGEVAFNDL LMDVANEIIS DPTGVLTLIG ERQSDDGDDD  300
TGVIRDDEDT GKLLCGPNKV MTNATAAASH EEEHHQLDQI SATNLSSSSN SNSKSSYGEA  360
EAAAFDRDDW YNSCSNYSPG SAAAATCKFD QQKQQRDGIN GTVNDEMRWD WESDIHRYDY  420
LWNVDQKDDE NMLSWLWEQQ AADDHHLDHS NKSRSEAVVV DDDCDPADKH NAILAWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23121295109B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301809.10.0PREDICTED: transcription factor MYB12-like
TrEMBLA0A2P6PIB40.0A0A2P6PIB4_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004301809.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62610.13e-67myb domain protein 11