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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000221.1.g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22062.3 Da PI: 4.7692 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+Wv+eIr p++ r r++lg+++t+e+Aa+a +aa +l+g FANhyb_rscf00000221.1.g00006.1 20 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALYCLRG 69 8*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.48E-29 | 19 | 79 | No hit | No description |
PROSITE profile | PS51032 | 22.326 | 20 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 20 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-21 | 20 | 78 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-11 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVMKQSIIGN QSAEQNNDAK YKGVRKRKWG KWVSEIRLPN SRERIWLGSY DTPEKAARAF 60 DAALYCLRGR TAKFNFPDNP PEISGGRSLS PAEIQAEAAR FANNEANPPI PPPQVPRSHS 120 DLSMSEQRTE ESPSVSEGSG TLVMDSASDF SVTVNQNEES FSDLFRTFGS GNYASEYGLF 180 PGFDDLNGQF FSPAPQTPAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-16 | 19 | 77 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287662.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 3e-58 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A3S8T8Z4 | 1e-129 | A0A3S8T8Z4_FRAAN; Transcription factor ERF10 | ||||
STRING | XP_004287662.1 | 1e-141 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-55 | ERF family protein |
Publications ? help Back to Top | |||
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