PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000190.1.g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 653aa MW: 71354 Da PI: 6.5602 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.7 | 5.8e-20 | 2 | 48 | 81 | 128 |
NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+d++v++ ++++vg+kktLvf++grap+g++t+Wvmheyrl FANhyb_rscf00000190.1.g00003.1 2 GYWKATGNDRPVKH-NNKTVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 48 9*************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.365 | 1 | 89 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-23 | 2 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-9 | 2 | 48 | IPR003441 | NAC domain |
SuperFamily | SSF51120 | 8.37E-12 | 133 | 270 | IPR011049 | Serralysin-like metalloprotease, C-terminal |
Gene3D | G3DSA:2.150.10.10 | 1.9E-12 | 133 | 297 | IPR011049 | Serralysin-like metalloprotease, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MGYWKATGND RPVKHNNKTV GMKKTLVFHS GRAPDGKRTN WVMHEYRLVD TEMERPGNGV 60 PQVRHWPNFV SLHLSMKLDA YVLCRVFHKS NIGPPNGHRY APFVEEEWDD EKLTFVPGEV 120 ARDETSAAHD SVGNHRDVVM LGNGHDFVGG NGHDSVGGNH YNVVMVGNGH DSAVGGNHHD 180 FIMVGNGHHS VVGGNHRDVV MAGNGHDSVV GGNCRDVVVI GNGRDSVVGG PIPDAVVGAN 240 GCHALVFGNG RDTVAGNACD AAVGGNGHAA AFIEQDVHDA VDIDQKDHVS MNNKMEVDGH 300 GTTKEGNVHG SIGGNGLKGA TAVNYIVQVL SRLDILDQFY KIVLQHSFQK SNINYKQGCV 360 QYGIRKCRSG YCTNLLILLA GKMVLPSLGF IGYASALRCG IRLFCQWDGS VTEWRINDPV 420 AMGNWKTSLI GCSYQDTQTI SNALLSATEL PKEDPTVLVP CKSEKLDDDP VTCVINREER 480 LDDYPSPLTD DPQPLLSLFN QQPGILRQYK RRRHNESNSN RSNASEISSG MTHDPCSSTT 540 TTASTEASVT ASTKRNFLSA LVEFQLLESL EPKDKTPVAP PEFNAALHNS SVPSSCLKFI 600 ESLQNEIHKI SIEKETLKFE MLSSQAVINI LQSRIDLLNK ENEELKRNAR EAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-17 | 2 | 91 | 94 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307019.1 | 0.0 | PREDICTED: uncharacterized protein LOC101300663 | ||||
TrEMBL | A0A2P6SCG4 | 0.0 | A0A2P6SCG4_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004307019.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 4e-42 | NAC domain containing protein 52 |