PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000182.1.g00014.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 915aa    MW: 105597 Da    PI: 7.6923
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000182.1.g00014.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.2e-2066141190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 
                                     +fY  YA ++GF+vr+ + ++s+++g++  r+fvCskeg++++              trtgC a ++v+++++gkw+++
  FANhyb_rscf00000182.1.g00014.1  66 EFYTLYAARMGFKVRIGQLYRSRTDGSVSARRFVCSKEGFQTS--------------TRTGCAALIRVQRRDSGKWVID 130
                                     6***************************************876..............79******************** PP

                            FAR1  80 kleleHnHela 90 
                                      + ++HnH+l 
  FANhyb_rscf00000182.1.g00014.1 131 LFLKNHNHDLG 141
                                     ********995 PP
2FAR143.41.1e-13218280177
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 
                                     ++Y++YA+++GF++r+ +  +sk++g+it+r+fvCs+eg+++++              r+gC a +++k++++g+w+
  FANhyb_rscf00000182.1.g00014.1 218 QYYHAYAERTGFRIRIGQLFRSKHDGSITSRRFVCSREGFQHPS--------------RVGCGAFMRIKRQESGRWC 280
                                     69**************************************9994..............799**********999995 PP
3FAR166.56.7e-21298373190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 
                                     ++Y++YA+++GF++r+ +  +sk++g+it+r+fvCs+eg++++              +r+gC a +++k++++gkw+v+
  FANhyb_rscf00000182.1.g00014.1 298 QYYHAYAERTGFRIRIGQLFRSKHDGSITSRRFVCSREGFQHP--------------SRVGCGAFMRIKRQESGKWVVD 362
                                     69**************************************999..............4899****************** PP

                            FAR1  80 kleleHnHela 90 
                                     +le++HnHel 
  FANhyb_rscf00000182.1.g00014.1 363 RLEKHHNHELE 373
                                     *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1666141IPR004330FAR1 DNA binding domain
PfamPF031011.4E-9218279IPR004330FAR1 DNA binding domain
PfamPF031011.8E-16298373IPR004330FAR1 DNA binding domain
PfamPF105512.8E-26525617IPR018289MULE transposase domain
PROSITE profilePS5096610.794800836IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-6811838IPR006564Zinc finger, PMZ-type
PfamPF044342.2E-7811833IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MESSSTHFTD MRSSDTDSKI EECVNNAYPL RMLMPVMNNA STNDEGESIL EPYVGLAFDS  60
ADGAREFYTL YAARMGFKVR IGQLYRSRTD GSVSARRFVC SKEGFQTSTR TGCAALIRVQ  120
RRDSGKWVID LFLKNHNHDL GPTEGNHSLI LQQKILTAKP VEVVHRPKCK LIEEVEDGRP  180
CPSGVITAKR SKLNGDEMQC EVEPSSGLKF NSANEAYQYY HAYAERTGFR IRIGQLFRSK  240
HDGSITSRRF VCSREGFQHP SRVGCGAFMR IKRQESGRWC EVEPSSGLEF NSANEAYQYY  300
HAYAERTGFR IRIGQLFRSK HDGSITSRRF VCSREGFQHP SRVGCGAFMR IKRQESGKWV  360
VDRLEKHHNH ELESQQEVQK KNLSVSKKFI EEENGGLDDE DIVDINIGNL VKKRRENHKT  420
IHELESQQEV QKKNLSVSKK FIWEENGGLD DEDIVEINSG NLVKKRRENH IGSDWYSVLF  480
DYFQTKQAED TGFFYAVEVD YGTCMSIFWA DGRSRFSCSQ FGDAIIFDTS YRKGMYLVPF  540
ATFIGINHNR QPVLLGCALL ADESEKSFTW LFQTWLRAMT GHCPRSIIAD QDDIIQQAII  600
NVFPGTHHRF SMWQMKAKEY EHLSSVHSSF QFEYEKCINQ SQTTDEFDTA WNLLLCRYGL  660
KDNTWLKAMY EKRQCWVPLY LRATFFAGIP LSGNIESFFG TLVNGQTPLV EFVPLYEKGL  720
ERRREEELKE NFNCSILNAY LQTKEPVEEQ CRRLYTLNVF RIFQKELLQS YSYLGFKVYE  780
EAAIVRYLVR KCGNDDDDKS TVTIGTSNHN VRCSCQMFEF EGVLCRHVLR VFQILEIKEV  840
PSRYILRRWR KNAEYGLPLY SESGGSPQEV NASMVWSLRE EACKYIDAGV TSLEKHKVAF  900
EILHEGRLRL GGPPR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462785.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2P6QXH90.0A0A2P6QXH9_ROSCH; Putative transcription factor FAR family
STRINGXP_004296979.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]