PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000179.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 1061aa MW: 120533 Da PI: 8.9656

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000179.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.6	5.6e-25	256	364	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtg 61 +fY+eYAk++GF ++++s++s+ +g++++++f Cs++g++ e+++ ++ r +++ ++t+ FANhyb_rscf00000179.1.g00008.1 256 SFYKEYAKSMGFAAVIKASRRSRASGKFIDAKFACSRYGTKPETSQPetaepvshsressiclkrKRGGRASQSLEKTD 334 5*************************************999888899*********9877778889*** PP FAR1 62 CkaklkvkkekdgkwevtkleleHnHelap 91 Cka+++vk+++dg+w v +l +eHnH+++p FANhyb_rscf00000179.1.g00008.1 335 CKACMHVKRRQDGRWTVCTLIKEHNHDIFP 364 ************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-23	256	364	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-30	491	583	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.198	771	807	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	780	803	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.001	782	809	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MVGQGSPLAA LDRSQQALGR LWRVNGAPSR SLGGSQQPLD GSRRPLKWSL RKFGRVKAGA 60 HWRPLDESQR PLGWSRPPSG SRLSLRRSWR VKVAPSTTLN GSHNPLASQS GSLAALGGLR 120 SPLSGPKRSR QPFGRNFDFD FLFGCVKVSI FCFKKVLVLA MGIDLEQPSG EFHQADNGPG 180 GNSHMVDGRE ENTSGDRVIV TVTNVPVNDR EIAGKNGSVS NFKNRVDARD EINLNAPKNL 240 ELHDGLEFES KEEAFSFYKE YAKSMGFAAV IKASRRSRAS GKFIDAKFAC SRYGTKPETS 300 QPETAEPVSH SRESSICLKR KRGGRASQSL EKTDCKACMH VKRRQDGRWT VCTLIKEHNH 360 DIFPDEAYYF RGHRKLDISS GNVGGNVGGN VDGLNAIRRR TKNLFANMSR QSGGYKKSTN 420 PKGGGKNQSP SVQHLSLEEG DAQVMLDHFL CMQDENPNFF YAIDLNEEQR LRNVFWVDAK 480 GRLDYEIFSD VVFLDTTYIK NEYKLPFAPF IGVNHHLQFI LLGCALLADE SKSTYVWLMR 540 AWSKAMDGHA PRVILTDQDK FLKEAVAEVF PDSRHCFCLW HILGKIPEKL GYVTRQHDQF 600 MENFNECIFK SWTIEQVEIR WFKMVDRFNL RNDIWLQSLF EDRRQWIPAF MRGIFLAGMS 660 TTQRSESLNC FFDKYMQRKT TLKEFLEQYN TILCEKYEEE AKADFETWHK QPALKSPSPF 720 GKQMATLYTH VVFKKFQVEV LGVVACHPKK EAEDGAIKTF RVQDFEEDHH FIVEWNEMTS 780 DISCLCHSFE FNGFLCRHVM IVLQISGVHN IPSQYILKRW TKDAKSRQTR GVGSSSVKSR 840 VQLYNDLCRR AFELGDEGSL SQESYNIAFV ALEEALRNCE NMINSIQRVI HPVSPETHGS 900 HSFEGVNQGN STNKMNKKNS TSKKGQVHSE PEVLTIEMQE SWQGLEQLSS SATTLDGYIG 960 PQQLVQVMGP LNTISSRREN YYSNQHMQGP GQLNSITHIQ DAQYINQQRL HGVGQFHFRP 1020 QTIPNFVIED DLQDMDQSTV GRTQIHGLAS KHLHSKHPSR Q

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MVGQGSPLAA LDRSQQALGR LWRVNGAPSR SLGGSQQPLD GSRRPLKWSL RKFGRVKAGA  60
HWRPLDESQR PLGWSRPPSG SRLSLRRSWR VKVAPSTTLN GSHNPLASQS GSLAALGGLR  120
SPLSGPKRSR QPFGRNFDFD FLFGCVKVSI FCFKKVLVLA MGIDLEQPSG EFHQADNGPG  180
GNSHMVDGRE ENTSGDRVIV TVTNVPVNDR EIAGKNGSVS NFKNRVDARD EINLNAPKNL  240
ELHDGLEFES KEEAFSFYKE YAKSMGFAAV IKASRRSRAS GKFIDAKFAC SRYGTKPETS  300
QPETAEPVSH SRESSICLKR KRGGRASQSL EKTDCKACMH VKRRQDGRWT VCTLIKEHNH  360
DIFPDEAYYF RGHRKLDISS GNVGGNVGGN VDGLNAIRRR TKNLFANMSR QSGGYKKSTN  420
PKGGGKNQSP SVQHLSLEEG DAQVMLDHFL CMQDENPNFF YAIDLNEEQR LRNVFWVDAK  480
GRLDYEIFSD VVFLDTTYIK NEYKLPFAPF IGVNHHLQFI LLGCALLADE SKSTYVWLMR  540
AWSKAMDGHA PRVILTDQDK FLKEAVAEVF PDSRHCFCLW HILGKIPEKL GYVTRQHDQF  600
MENFNECIFK SWTIEQVEIR WFKMVDRFNL RNDIWLQSLF EDRRQWIPAF MRGIFLAGMS  660
TTQRSESLNC FFDKYMQRKT TLKEFLEQYN TILCEKYEEE AKADFETWHK QPALKSPSPF  720
GKQMATLYTH VVFKKFQVEV LGVVACHPKK EAEDGAIKTF RVQDFEEDHH FIVEWNEMTS  780
DISCLCHSFE FNGFLCRHVM IVLQISGVHN IPSQYILKRW TKDAKSRQTR GVGSSSVKSR  840
VQLYNDLCRR AFELGDEGSL SQESYNIAFV ALEEALRNCE NMINSIQRVI HPVSPETHGS  900
HSFEGVNQGN STNKMNKKNS TSKKGQVHSE PEVLTIEMQE SWQGLEQLSS SATTLDGYIG  960
PQQLVQVMGP LNTISSRREN YYSNQHMQGP GQLNSITHIQ DAQYINQQRL HGVGQFHFRP  1020
QTIPNFVIED DLQDMDQSTV GRTQIHGLAS KHLHSKHPSR Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	90	RLSLRRSWRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293778.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_011460505.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_011460506.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
TrEMBL	A0A2P6Q7C3	0.0	A0A2P6Q7C3_ROSCH; Putative transcription factor FAR family
STRING	XP_004293778.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein