PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000174.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 616aa    MW: 66047 Da    PI: 9.7386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000174.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0590112123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     + C+ C+k F r  nL+ H r H
  FANhyb_rscf00000174.1.g00004.1  90 FICEVCNKGFQREQNLQLHRRGH 112
                                     89*******************88 PP
2zf-C2H2130.0003166188123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     +kC++C+k++  +s+ k H +t+
  FANhyb_rscf00000174.1.g00004.1 166 WKCEKCSKRYAVQSDWKAHSKTC 188
                                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-689112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-789112No hitNo description
PROSITE profilePS5015710.9990112IPR007087Zinc finger, C2H2
PfamPF121713.0E-590112IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005290112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355160131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-7161186No hitNo description
SMARTSM00355130166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MAAASSSLAF FGSNSRDENQ NQLMASLQQP PPVSSTAPIS TTPPTAPPPK KRRNQPGNPS  60
KYLYPSFHTH HPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ  120
KTNKEPKRKV YLCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPSSLSA MATSSHLYPG  240
NNQMMSLGLS QMGGGSSLPP NNMLRLGTTG AGGAAKFEHL MNPSSFGQAQ PMPNSSASFF  300
NQGFQDQQQS LNGSFAANKS LHGLMQLPDL QSNTPSNNSP SSTTTAAGSL FNLGFFSNNN  360
SDHHQFSDGN GGSQGTTLFP NGMTDHIGSA LPSSLFGNSL QHENMTGAHM SATALLQKAA  420
QMGSTTSTES SSLLRGLAGS TSSNTRAGTK SISGRQLVSS NSNVGGVSFS RESSSGGEHE  480
QHMRSQQQQQ VENDNRHLQG LIMNSLANGN STAASIFGSS SADHHNNFGA HGFANGSTTR  540
VSLMDQQQHN NTNFSNVDEA KLTLDFLGVG GIVRNMGGGG GGGGYEHRGI NMSSLDPELK  600
SSQQPSQAYG GTSALQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34162229369Zinc finger protein JACKDAW
5b3h_F2e-34162229369Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297790.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A2P6R4F70.0A0A2P6R4F7_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004297790.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-112indeterminate(ID)-domain 4