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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000170.1.g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 558aa MW: 60908.2 Da PI: 7.097 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 351 | 393 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L FANhyb_rscf00000170.1.g00006.1 351 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 393 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.58 | 344 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-17 | 347 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-13 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-9 | 350 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-16 | 351 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.05E-12 | 351 | 397 | No hit | No description |
CDD | cd04873 | 6.88E-6 | 464 | 505 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MLPRLNGGIW MEDREERDAG DWARTAGAGA GSSKDEMGSL SNFKSMLEVE DEWYLNNNNN 60 GIQGHSDVVR DLTFSPSFAD PESLLLNQVD SSSSCSPSSS VFNNLDPSQV QYYLHQNPSL 120 SSMLNAVPNN NNNPLDHGFD LGCEIGFLDN QGSSLMNRGG GVLTRFNDLS SNTHMQPQNI 180 CSNLQFTTTR LPHLLENSTN FSGFRGVDDA SGNGLFNNRS KMLRPLQPLS SVGAQPTLFQ 240 KRAAKNLGGN GGNLSGLGSE GGLVLSNYEG GKGKRDMGEE NEKKRKFSGG DDGEDLSLDG 300 SGLNYDSDEF TENNKVDENG KNVGNSSNAN STVTGGEHKG KKKGLPAKNL MAERRRRKKL 360 NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINNL HNELESLPPG SALTPTASTF 420 HPLTPTPPTL PSRIKEELCP SLPSPNGQPA RVEVRLREGR AVNIHMFCGR RPGLLLSTMR 480 AVDNLGLDIQ QAVISCFNGF AMDIFRAEVI LLHPVIAMQG RPRRPPRAYK GSTIGFSWLP 540 WHDIGVASEQ QTGVALPR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 358 | KKKGLPAKNLMAERRRRKK |
2 | 352 | 359 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes. Binds specifically to the MYC recognition sites (5'-CANNTG-3') found in the CBF3/DREB1A promoter. Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA. Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:17416732, ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, cold stress and abscisic acid (ABA) treatment. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297495.2 | 0.0 | PREDICTED: transcription factor ICE1 | ||||
Swissprot | Q9LSE2 | 1e-122 | ICE1_ARATH; Transcription factor ICE1 | ||||
TrEMBL | A0A2P6P4L5 | 0.0 | A0A2P6P4L5_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004297495.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2414 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 1e-109 | bHLH family protein |