PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000164.1.g00014.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 375aa MW: 41897.9 Da PI: 8.0288

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000164.1.g00014.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.7	3.2e-32	17	114	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavg 78 aCaaC+++r++C++dCv+apyf a+++++f++vhklFG+sn++kllk+l++++ r +a++s v+eA ++ +dP+ G g FANhyb_rscf00000164.1.g00014.1 17 ACAACRHQRKRCEEDCVMAPYFTADKEEEFKAVHKLFGVSNMSKLLKQLEDQNhRAQAVASFVWEAYMWKQDPIAGPRG 95 7**********************************************87776********************* PP DUF260 79 vilklqqqleqlkaelall 97 +++l+++ lk+ l++ FANhyb_rscf00000164.1.g00014.1 96 RYKALEEECVYLKSLLKSN 114 *****999888776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.204	16	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-31	17	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSIGSNNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK 60 LLKQLEDQNH RAQAVASFVW EAYMWKQDPI AGPRGRYKAL EEECVYLKSL LKSNRPQQEP 120 VGVVDQGSTK GEVEFEGGGV PIYGRGLNYG YPDQTLGLDH GCTSSFTSLL QGQDTESRKA 180 LADCVSVAST TYPTPLSQVR GFQDQRRSGM ESFNFFHQYP TFQGSNVNHN YRPIQAQGRG 240 RGTGAGGIMT DCARTCNGLV VYDPHTGQVQ KREIGAMVPQ VGPILSGHRR STNQRFSPYD 300 QHNPIQVPRQ AMRQQDQNQQ NFPAQHQWNT NSQNCDNFQG KALSVFVFLH CIWHGIILDI 360 TLLCSTAQRY VIAIE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSIGSNNTGE PSGGRHACAA CRHQRKRCEE DCVMAPYFTA DKEEEFKAVH KLFGVSNMSK  60
LLKQLEDQNH RAQAVASFVW EAYMWKQDPI AGPRGRYKAL EEECVYLKSL LKSNRPQQEP  120
VGVVDQGSTK GEVEFEGGGV PIYGRGLNYG YPDQTLGLDH GCTSSFTSLL QGQDTESRKA  180
LADCVSVAST TYPTPLSQVR GFQDQRRSGM ESFNFFHQYP TFQGSNVNHN YRPIQAQGRG  240
RGTGAGGIMT DCARTCNGLV VYDPHTGQVQ KREIGAMVPQ VGPILSGHRR STNQRFSPYD  300
QHNPIQVPRQ AMRQQDQNQQ NFPAQHQWNT NSQNCDNFQG KALSVFVFLH CIWHGIILDI  360
TLLCSTAQRY VIAIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-15	13	103	7	96	LOB family transfactor Ramosa2.1
5ly0_B	4e-15	13	103	7	96	LOB family transfactor Ramosa2.1

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00128	DAP	Transfer from AT1G06280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460591.1	0.0	PREDICTED: uncharacterized protein LOC101305925
TrEMBL	A0A2P6Q4F7	0.0	A0A2P6Q4F7_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004295564.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14786	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	3e-25	LOB domain-containing protein 2