PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000163.1.g00013.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 442aa    MW: 51037.6 Da    PI: 4.197
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000163.1.g00013.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.71.3e-2091483128
                             NAM   3 pGfrFhPtdeelvveyLkkkvegkklele.evikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyat 70 
                                     pG rF P ++el+++yL++kv+g +++ + +vi e+d+y   +Pw++ +     +  a    ++k++yfF++++k++a+
  FANhyb_rscf00000163.1.g00013.1   9 PGQRFCPMEDELLMFYLEPKVNGMPVPGDgDVIYELDLYGDqDPWKIWQryeeeR--AndlrRNKDLYFFTQKKKTTAK 85 
                                     8************************7775156******97549****75244441..1345456689************ PP

                             NAM  71 gkrknr.atksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     ++r +r + + g+W+ +   k+v+        ++++ glkkt ++   ++ + +  +W+m e++l
  FANhyb_rscf00000163.1.g00013.1  86 SSRVRRtVGTGGTWRGQTAGKDVFLLdenhqpTTTVLGLKKTYTYR--NKGSVHDGRWIMYEFEL 148
                                     ******5555899**8888888877644444444459******998..44445689*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.6277170IPR003441NAC domain
SuperFamilySSF1019413.01E-248169IPR003441NAC domain
PfamPF023654.6E-159148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEGDRMPLPG QRFCPMEDEL LMFYLEPKVN GMPVPGDGDV IYELDLYGDQ DPWKIWQRYE  60
EERANDLRRN KDLYFFTQKK KTTAKSSRVR RTVGTGGTWR GQTAGKDVFL LDENHQPTTT  120
VLGLKKTYTY RNKGSVHDGR WIMYEFELHK SQLKKQVNKN DYVLCLLRKN DLLPEKKRKR  180
QQEEESLEDY VEDDEAVNTD PESVSEEEPQ EKRQRLLPSL EDEQEQFLQV QPAPSLEAEQ  240
EALPTPLEDD PVFLQEGEFM EWQESDFASL EQFLQDESEA RPTALEAEQV SLLVDENSGL  300
QQLEAEPQLG EDNLEQQLDA VPLFAAQKIS AGIQSHPDEN MVQQVGGEAN MYSENLGDAM  360
HGENWHMSFA EELMNGEQPN TMEEGEWNAV YPGFDEQVSL RVDENSGLKQ LQAESQLGEK  420
IWSSNLMQYH CLQLKKTGLW KN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459909.10.0PREDICTED: uncharacterized protein LOC105350160
TrEMBLA0A2P6QGR31e-124A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.19e-15vascular related NAC-domain protein 7