PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000157.1.g00014.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 678aa    MW: 75094.5 Da    PI: 6.5047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000157.1.g00014.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2201.2e-673455461205
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..ssee 77 
                                     lv+lLl+cAeav+++d  la+++L +l++ +s  gd+mqR+aa+fteAL+arla + ++ ++al+p++ s+    s e 
  FANhyb_rscf00000157.1.g00014.1 345 LVHLLLACAEAVAKEDYMLARRYLHHLNQVVSALGDSMQRVAACFTEALSARLAATLTTNSSALAPKPFSPFPpnSLEI 423
                                     68*****************************************************99999999999988865455**** PP

                            GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgske 156
                                     l+++++ ++++P++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+      e
  FANhyb_rscf00000157.1.g00014.1 424 LKIYQIVYQACPYIKFAHFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGP----CIE 498
                                     ************************************************************************....*** PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                                     +++etg+ L+++A +l+vpfef++ v ++ledl++++++ + gEala n
  FANhyb_rscf00000157.1.g00014.1 499 AVKETGRCLTELAISLHVPFEFHA-VGEQLEDLKPHMFNRRIGEALAWN 546
                                     ************************.7********************966 PP
2GRAS128.48.4e-40552677249374
                            GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                                     ++++F  +f++ + +   +  sl+a++p++s +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e  GFk+v
  FANhyb_rscf00000157.1.g00014.1 552 TDPTFWGGFSKPCTITRRFSYSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGAERTERHERLEKWRKVMEGKGFKSV 630
                                     577899999999999999999********************************************************** PP

                            GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     pls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  FANhyb_rscf00000157.1.g00014.1 631 PLSANAVTQSKILLGLYSCDGYRMMEDKGCLLLGWQDRSIMAASAWR 677
                                     **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.867319657IPR005202Transcription factor GRAS
PfamPF035144.0E-65345546IPR005202Transcription factor GRAS
PfamPF035142.9E-37552677IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MMMNSHCGSM GSIKSENSCS DFKPTSPNES TIMSEAPKKA TSTTTTALSS SDMMEQSTTS  60
LTPPSLNFPA LKFELDGDVE VESPDHSIWE AFFSEQFDTD FMVLSPVANT NNNLPNSPRS  120
FGYNNGQVMQ GQSSFSSCSP PRFGSSPLGA FSRDNSKGKG LSPLRRVFNS PVNYIQQEPE  180
NLQSLPPASI EDFLDDYQRD GFVAAYGNPN LNNQTTTCTS KMSAGVNNPS SQSYHNPMTS  240
MDCNMSTSMQ NPSRFSRSVS ETSLVTACNS QTSQESRGGG AYHHQMGSNS GAPLSQQLMH  300
ERQQEKQHMQ MHPQKQHHNN HNYNMMVPSF PPAAPEPEQD SGLQLVHLLL ACAEAVAKED  360
YMLARRYLHH LNQVVSALGD SMQRVAACFT EALSARLAAT LTTNSSALAP KPFSPFPPNS  420
LEILKIYQIV YQACPYIKFA HFTANQAIFE AFESEERVHV IDLDILQGYQ WPAFMQALAA  480
RSGGAPFLRI TGVGPCIEAV KETGRCLTEL AISLHVPFEF HAVGEQLEDL KPHMFNRRIG  540
EALAWNKRPA TTDPTFWGGF SKPCTITRRF SYSLDATFPP DSAQRAKVEQ YIFAPEIRNI  600
VACEGAERTE RHERLEKWRK VMEGKGFKSV PLSANAVTQS KILLGLYSCD GYRMMEDKGC  660
LLLGWQDRSI MAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-7035267626378Protein SCARECROW
5b3h_A4e-7035267625377Protein SCARECROW
5b3h_D4e-7035267625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304540.20.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2P6S6K00.0A0A2P6S6K0_ROSCH; Putative transcription factor GRAS family
STRINGXP_004304540.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-69RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]