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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | FANhyb_rscf00000140.1.g00010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | bHLH | ||||||||
| Protein Properties | Length: 1929aa MW: 220401 Da PI: 6.6129 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 24.3 | 5.8e-08 | 153 | 195 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
E RR + N + Lrel+P++ +K + a+i+ A++YI++L
FANhyb_rscf00000140.1.g00010.1 153 LTEHERRVKTNRQYTALRELVPNP-----TKSDRASIVGDAINYIQEL 195
57999*******************.....9****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.909 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 3.6E-7 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.8E-5 | 153 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 9.16E-10 | 153 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 153 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.78E-5 | 155 | 200 | No hit | No description |
| Pfam | PF16399 | 0 | 452 | 1277 | IPR032174 | Intron-binding protein aquarius, N-terminal |
| Gene3D | G3DSA:3.40.50.300 | 4.1E-30 | 1259 | 1391 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52540 | 4.85E-53 | 1271 | 1345 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF13086 | 1.1E-28 | 1284 | 1578 | No hit | No description |
| CDD | cd00046 | 0.00227 | 1294 | 1390 | No hit | No description |
| SuperFamily | SSF52540 | 4.85E-53 | 1482 | 1841 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.1E-30 | 1527 | 1624 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF13087 | 6.2E-25 | 1587 | 1778 | No hit | No description |
| Gene3D | G3DSA:3.40.50.300 | 8.8E-5 | 1671 | 1788 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005886 | Cellular Component | plasma membrane | ||||
| GO:0009507 | Cellular Component | chloroplast | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1929 aa Download sequence Send to blast |
MMKCNNNHHH LICSAFFTRP PLLCSHPPPL PSLTPRTRVG CFPGSFGYEA LLESPSGAAA 60 SSVMYDPMIH LNQQPPQSQP PLFRELLQSL PHQYNLGGPS NGSILFSNGR NEEEHGSRQL 120 LENGVMEFSK EMKPCGRGRG RGRGRGGNKG TKLTEHERRV KTNRQYTALR ELVPNPTKSD 180 RASIVGDAIN YIQELRRTVS ELKLLVEKKR CGRERSKRHK TEKDIGAGDD DESCNMKPLG 240 DPDHDHSYNN ESLRSSWLQR KSKDTEVDVR IIDDEVTIKL VQMKKINPLL SVSKVLDELL 300 LELHHASGGH IGNSYSFLFN TKMYEGSCLY ASAIANKLIE ALDRQYAAIP PTNSHYLQVT 360 AYPQLPITRE AQDSRHHIQN IKSDCVXXXX XXXXXXXXXX XXXXXXYGTG AYDFKRHHVA 420 EYPVDLSHQL GDKPVEAKPG AALPSSITLS EIQRDQLTMI AAANWSRVGD AKEKKPAFDP 480 ELVKRIYETE LRVKEGQRKT VPLQRVMILE VSQYLENYLF PNFDAETATF EHVMSMILMV 540 NEKFRENVAA WVCFYDRKDA FKGFLGRVLR LKSERELGIA EKTNYLVFMI NAFQSLEDEI 600 VSETVLRLAS FQSWHSLSYG RFQMELGLNS DLIKKWRRMV KREAAKHGES FNPSTALEVQ 660 FLRNLIEEFL EILDSKVLPP NHGVNGEDQL LDVNGMEHVD DACVLYCERF VEFLIDLLSQ 720 LPTRRYLRPL VADVAVVPKC HLSALYRHEK GKLFTQLVDL LQFYEGFEIN DNVGKQLTDD 780 EVLQSHYDRV QSFQLLAFKK IPKLKELALA NIGSIDNRND LTKRLSVLSP EELKDLVCSK 840 LKLISKNDPW SSRVDFLTEV MVSFFKRQQS QKEKINALPL YPNELIMWDE SLVPSINYSG 900 EGCLALPKLN LQFLTLHDYL LRNFDLFRLE STYEIREDIQ EAVPHLNACI NNEGETAFRG 960 WSRMAVPIKE FKISEVKQPN IGEVKPAAVT AEITFSISSY KAQVRSEWNA LKEHDVLFLL 1020 SIRPSFEPLS AEEGAKASVP QKLGLQYVRG CEIIEVRDEE GTLMNDFTGR IKRDEWKPPK 1080 GELRTLTVAL DTAQYYMDVS NTAAKGAEDV YGTFNILMRR KPKENNFKAI LESIRDLMNE 1140 YCIVPDWLHK TFLGYGNPSA AQWTNMPDLL ETVDFKDTFL DAEHLRECFP DSQVFFVSPD 1200 GTENMDPRPP FRVRLPKTIK SSTNALPGNK KAKMSSMSDV PIEDSDKEKE KFVVEAYTPP 1260 DPGPYPQDQP RQNSVRFTPT QVGAILSGIQ PGLTMVVGPP GTGKTDTAVQ ILNVLYHNCP 1320 SQRTLIITHS NQALNDLFEK IMQRDVPARY LLRLGQGEQE LATDLDFSRQ GRVNAMLVRR 1380 LELLSEVERL ARSLQLPEDV GYTCETAGYF WLLHVYSRWE QFLAACNENK NKQSFVKDRF 1440 PFKEFFSDSP KPVFTGESFE KDMRAAKGCF RHLKTVFQEL EECRAFELLK STADRANYLM 1500 TKQAKIVAMT CTHAALKRKD FLQLGFKYDN LLMEESAQIL EIETFIPMLL QRQEDGYARL 1560 KRCILIGDHH QLPPVVKNMA FQKYSHMDQS LFTRFVRLGI PYIELNAQGR ARPSIAQLYN 1620 WRYRELGDLP CVKQDAIFNK ANSGFSFEYQ LVDVPDYHDR GESAPSPWFY QNEGEAEYVV 1680 SVYIYMRLLG YPANKISILT TYNGQKLLIR DVINRRCAPY DFIGPPSKVT TVDKFQGQQN 1740 DFILLSLVRT RFVGHLRDVR RLIVAMSRAR LGLYVFCRRS LFEQCYELQP TFQLLLQRPD 1800 RLALNFNETT PHTERHVEET GPVHLVSSVD EMISIYQQLY AVKFHQYVAP SIQQTSMSGQ 1860 DPMDADIPVS ADGVPDDTLH VSNSELEDNG QKVDSSVENH SNGVTEMETS MDNAHVVPES 1920 NSDQVRMEE |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5mqf_U | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| 5xjc_Q | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| 5yzg_Q | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| 5z56_Q | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| 5z57_Q | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| 6ff7_U | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| 6icz_Q | 0.0 | 448 | 1845 | 14 | 1371 | RNA helicase aquarius |
| 6id0_Q | 0.0 | 448 | 1845 | 14 | 1371 | RNA helicase aquarius |
| 6id1_Q | 0.0 | 448 | 1845 | 14 | 1371 | RNA helicase aquarius |
| 6qdv_U | 0.0 | 448 | 1845 | 14 | 1371 | Intron-binding protein aquarius |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RGRGRGRGRG |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011466815.1 | 0.0 | PREDICTED: intron-binding protein aquarius | ||||
| Swissprot | O60306 | 0.0 | AQR_HUMAN; RNA helicase aquarius | ||||
| TrEMBL | A0A2P6S8L4 | 0.0 | A0A2P6S8L4_ROSCH; Putative intron-binding protein aquarius | ||||
| STRING | XP_004305390.1 | 0.0 | (Fragaria vesca) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G31220.1 | 4e-66 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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