PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000134.1.g00005.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 791aa MW: 90649.4 Da PI: 6.4427

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000134.1.g00005.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.6	7.6e-32	85	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwev 78 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v FANhyb_rscf00000134.1.g00005.1 85 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVV 163 9*************************************998888545677889******************** PP FAR1 79 tkleleHnHelap 91 + +++eHnHel+p FANhyb_rscf00000134.1.g00005.1 164 SGFVKEHNHELVP 176 *********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-30	85	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.9E-32	297	389	IPR018289	MULE transposase domain
Pfam	PF04434	4.0E-11	565	611	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	577	613	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.4E-9	588	615	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLIG SASGSVNGVG FSGGSGEIYL 60 PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK 120 EGFRNLNEKR TKDREIKRPR TITRVGCKAS LSVKMQDSGK WVVSGFVKEH NHELVPPDQV 180 HCLRSHRQIS GSAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ 240 RSLDGDIQML LDYLRQMQAD NQNFFYAVQG NEDQAMGNVI WADPKAKMNY NYFGDTVTFD 300 TTYRSNRYRL PFAPITGINH HGQPVLFGCA FLINESEASF VWLFKTWLMA MSGRPPLSIT 360 TDYDPMIQSA IMQVFPQTRH RFCKWHIFKK CQEKLSHVFL QHPNFEADFH KCVNLTESIE 420 EFESCWLSLV DRYDLRDHEW LQTVYSARRQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY 480 VNASTNLSQF FKLYEKALES RNEKEVKADF DTMNTSPVLK TPSPMEKQAS EFYTKKIFMR 540 FQEELVGTLT FTASKGDDDG EFISYQVAKF GEDHKAYYVK LNVLEMIANC SCQMFEFSGL 600 LCRHVLAVFR VTNVLTLPPH YILKRWTRNA KSSVILEERS SDVYTNYLES HTVRYNTLRH 660 QAFKFVDGAK SSETYDLALE ALKEAATKVA HAIKNDGRNV MLNGHIRGNL VGGGSRANYT 720 IGDHDESSGQ NLSEDDMDKK IREITNELEC ANRKCEVYRA NLLSLLKDIE DHKLQLSIKV 780 ENIKISMKDG F

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLIG SASGSVNGVG FSGGSGEIYL  60
PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK  120
EGFRNLNEKR TKDREIKRPR TITRVGCKAS LSVKMQDSGK WVVSGFVKEH NHELVPPDQV  180
HCLRSHRQIS GSAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ  240
RSLDGDIQML LDYLRQMQAD NQNFFYAVQG NEDQAMGNVI WADPKAKMNY NYFGDTVTFD  300
TTYRSNRYRL PFAPITGINH HGQPVLFGCA FLINESEASF VWLFKTWLMA MSGRPPLSIT  360
TDYDPMIQSA IMQVFPQTRH RFCKWHIFKK CQEKLSHVFL QHPNFEADFH KCVNLTESIE  420
EFESCWLSLV DRYDLRDHEW LQTVYSARRQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY  480
VNASTNLSQF FKLYEKALES RNEKEVKADF DTMNTSPVLK TPSPMEKQAS EFYTKKIFMR  540
FQEELVGTLT FTASKGDDDG EFISYQVAKF GEDHKAYYVK LNVLEMIANC SCQMFEFSGL  600
LCRHVLAVFR VTNVLTLPPH YILKRWTRNA KSSVILEERS SDVYTNYLES HTVRYNTLRH  660
QAFKFVDGAK SSETYDLALE ALKEAATKVA HAIKNDGRNV MLNGHIRGNL VGGGSRANYT  720
IGDHDESSGQ NLSEDDMDKK IREITNELEC ANRKCEVYRA NLLSLLKDIE DHKLQLSIKV  780
ENIKISMKDG F

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290092.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P6PTI9	0.0	A0A2P6PTI9_ROSCH; Putative transcription factor FAR family
STRING	XP_004290092.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]