PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000118.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 365aa    MW: 42248 Da    PI: 6.2533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000118.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.23.9e-2451501127
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee..............vikevdiykvePwdLpkkvkaeek.e 57 
                                     +p+GfrFhP++ elv++yL  kv+g++       l   +               ++evdiy  ePw++ ++++ +++ +
  FANhyb_rscf00000118.1.g00010.1   5 MPKGFRFHPKEYELVNYYLYGKVNGEEsvspppyL---KlpevdiyvspppylKLPEVDIYGEEPWEIWERFERQDEeS 80 
                                     699***********************976665551...1555668888999867**************87777766626 PP

                             NAM  58 wyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                     +yfF+  +k +++gkr  r t+   g+W++  ++++v +++g+ +g+k+ + + +  + + +++ W m+ey+
  FANhyb_rscf00000118.1.g00010.1  81 LYFFAIPKKLNPKGKRIDRRTNsrLGTWSEGERSRPVDDENGKPIGTKRKFRYES--DDSLHHAAWHMEEYS 150
                                     6****************997764479**************************984..555569********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-243164IPR003441NAC domain
PROSITE profilePS5100525.0525184IPR003441NAC domain
PfamPF023651.4E-156150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSIVMPKGFR FHPKEYELVN YYLYGKVNGE ESVSPPPYLK LPEVDIYVSP PPYLKLPEVD  60
IYGEEPWEIW ERFERQDEES LYFFAIPKKL NPKGKRIDRR TNSRLGTWSE GERSRPVDDE  120
NGKPIGTKRK FRYESDDSLH HAAWHMEEYS SNFSPHWVIC HLKKNKRSSE SKKTKDTLCE  180
DDPPRLRGMK CNKRKNNKDY PSTSIMPKSK RLRKVDNQVV ENSLVKEKDL PQSSSGTNDQ  240
QFSMPGNNYF ENGLQQISTT TSSTNDKDQQ FCTANLGNFM PISDVNVVDS MYTLCNNYYN  300
YGKDLQQSST TTCSTYEHIN STSHLDFVVG HDDGNVIPIN DAKGDDPNSW YNLWNTLLTE  360
DYSGC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306365.10.0PREDICTED: NAC domain-containing protein 2-like
STRINGXP_004306365.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3393422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-16NTM1-like 8