PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000118.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 42248 Da PI: 6.2533 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.2 | 3.9e-24 | 5 | 150 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee..............vikevdiykvePwdLpkkvkaeek.e 57 +p+GfrFhP++ elv++yL kv+g++ l + ++evdiy ePw++ ++++ +++ + FANhyb_rscf00000118.1.g00010.1 5 MPKGFRFHPKEYELVNYYLYGKVNGEEsvspppyL---KlpevdiyvspppylKLPEVDIYGEEPWEIWERFERQDEeS 80 699***********************976665551...1555668888999867**************87777766626 PP NAM 58 wyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +yfF+ +k +++gkr r t+ g+W++ ++++v +++g+ +g+k+ + + + + + +++ W m+ey+ FANhyb_rscf00000118.1.g00010.1 81 LYFFAIPKKLNPKGKRIDRRTNsrLGTWSEGERSRPVDDENGKPIGTKRKFRYES--DDSLHHAAWHMEEYS 150 6****************997764479**************************984..555569********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-24 | 3 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.052 | 5 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-15 | 6 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 365 aa Download sequence Send to blast |
MSIVMPKGFR FHPKEYELVN YYLYGKVNGE ESVSPPPYLK LPEVDIYVSP PPYLKLPEVD 60 IYGEEPWEIW ERFERQDEES LYFFAIPKKL NPKGKRIDRR TNSRLGTWSE GERSRPVDDE 120 NGKPIGTKRK FRYESDDSLH HAAWHMEEYS SNFSPHWVIC HLKKNKRSSE SKKTKDTLCE 180 DDPPRLRGMK CNKRKNNKDY PSTSIMPKSK RLRKVDNQVV ENSLVKEKDL PQSSSGTNDQ 240 QFSMPGNNYF ENGLQQISTT TSSTNDKDQQ FCTANLGNFM PISDVNVVDS MYTLCNNYYN 300 YGKDLQQSST TTCSTYEHIN STSHLDFVVG HDDGNVIPIN DAKGDDPNSW YNLWNTLLTE 360 DYSGC |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306365.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
STRING | XP_004306365.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF33934 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27300.1 | 1e-16 | NTM1-like 8 |