PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000117.1.g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 248aa    MW: 28429.2 Da    PI: 8.2193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000117.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.17e-2984171290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                     fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw vtk
  FANhyb_rscf00000117.1.g00005.1  84 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTINPRAPTRVGCMAMLSIKKLNIGKWIVTK 161
                                     9******************************************999.99****************************** PP

                            FAR1  81 leleHnHela 90 
                                     + +eHnH+l 
  FANhyb_rscf00000117.1.g00005.1 162 FIKEHNHALI 171
                                     *******995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2584171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MNFHIAVASV PDINVAHEVS NASTDAEFKR YNDSAVVGTS LQKILWVVQN DDRTQNSSQD  60
GSLVEVDEPY VGQEFDTEVD AQAFYNVYGL RMGFNTRMNY LSRSKHDGTI IARTFVCSKE  120
GYRKPDRRDK KTINPRAPTR VGCMAMLSIK KLNIGKWIVT KFIKEHNHAL IASKRPKGLV  180
EDQIPDDKTK IEELNRELFL ERERSTSLRK VIDLLFEHIE EHTQDLSKKV QYVVDKVKEI  240
ESEGKKPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302184.21e-173PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A315A5A01e-116A0A315A5A0_PRUYE; Uncharacterized protein
TrEMBLM5W2V71e-119M5W2V7_PRUPE; Uncharacterized protein
STRINGXP_004302184.11e-179(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-61FAR1 family protein