PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000105.1.g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TALE | ||||||||
Protein Properties | Length: 289aa MW: 32623.7 Da PI: 6.7232 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.4 | 2.1e-07 | 238 | 271 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + FANhyb_rscf00000105.1.g00007.1 238 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 271 468*****************************87 PP | |||||||
2 | ELK | 25.5 | 3e-09 | 192 | 213 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ FANhyb_rscf00000105.1.g00007.1 192 ELKIELKQGFKSRIEDVREEIL 213 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.7E-18 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.9E-17 | 27 | 68 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-24 | 83 | 138 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.9E-18 | 86 | 137 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 192 | 212 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 212 | 275 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.76E-16 | 214 | 279 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 214 | 279 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.12E-11 | 215 | 276 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 219 | 277 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.6E-18 | 232 | 271 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MQDSGLGMMG SGGGLSGGGG DDHAHQLKSE IATHPLYEQL LSAHVSCLRV ATPIDQLPLI 60 DAQLSQSHHL LRSYASHHQQ HGHSLSPHER QELDNFLAQY LIVLCSFKEQ LQQHVRVHAV 120 EAVMACREIE STLQALTGVT LGEGTGATMS DDEDDMPTDF SMDQAGSDAH DMMGFGLPTE 180 SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK NWWQQHSKWP 240 YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 215 | 271 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 288 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298727.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 7 | ||||
Swissprot | Q9FPQ8 | 1e-166 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A2P6P7H7 | 0.0 | A0A2P6P7H7_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004298727.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-164 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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