PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000101.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 271aa    MW: 30222 Da    PI: 9.9921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000101.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-192979155
                             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                    +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  FANhyb_rscf00000101.1.g00005.1 29 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 79
                                    799*******.7*********33....36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.20E-332986No hitNo description
PfamPF008472.4E-132979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-283088IPR001471AP2/ERF domain
SMARTSM003805.8E-383093IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-203088IPR016177DNA-binding domain
PROSITE profilePS5103219.9153087IPR001471AP2/ERF domain
PRINTSPR003674.6E-83142IPR001471AP2/ERF domain
PRINTSPR003674.6E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGLQSQKREK GVSAEKESKL KQRSSNTRCK FVGVRQRPSG KWVAEIKDTT KKIRMWLGTF  60
ETAEEAARAY DEAACLLRGS NTRTNFTSSH VASNSPLSLK IKNLLNHKKS LTQQSPSTSN  120
TMKTTPKAST RVSCTITDNN IHSSGYYNGH CSSLLSFKTH NIEVSGDAYR PDLSNCIGNN  180
VQVPAVLHLD QPWQFLSGFD QLPNNHEGLD STKGIATGVS HSAAETNQLT EFEHAKVERN  240
KKVGLHLPLY SELLFHPMTP DEKFNRPMSF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-153186359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-1530861471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461684.11e-172PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLA0A3S8T9821e-175A0A3S8T982_FRAAN; Transcription factor ERF40
STRINGXP_004296200.11e-172(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-32related to AP2 11