PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000096.1.g00005.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 481aa    MW: 54062.6 Da    PI: 9.9063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000096.1.g00005.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.72.1e-1421030931127
                             NAM  31 eevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvgl 102
                                      + ike+d+y+ +P dLp     ++  + ++ ++F+ + +      ++ ra +sgyW+ +g+ ++v+     ++++ g 
  FANhyb_rscf00000096.1.g00005.1 210 YDLIKELDLYDRDPFDLPdYacySYGRGGRRRHWFCYTVRVL----KEWRA-RSGYWRRKGRVRDVVGGgggGKAVLGR 283
                                     378***************535553333444555555555543....34554.78*************9887777789** PP

                             NAM 103 kktLvfykgrapk.gektdWvmheyr 127
                                     + ++vfy g++pk +++tdWv+ +y+
  FANhyb_rscf00000096.1.g00005.1 284 RSSFVFYLGNSPKtAVRTDWVLYQYA 309
                                     *******997766167*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.957183363IPR003441NAC domain
SuperFamilySSF1019419.55E-17204320IPR003441NAC domain
PfamPF023653.8E-5223309IPR003441NAC domain
SuperFamilySSF1019419.55E-17351361IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MADTFPAAGS TPQNSSSSLI IYRTRKSIWQ YPGPTMGSEN CTTYGASNRQ SYRIGVGIGG  60
RGTGTFIWLE FGRRRRKRSR DIGKGQVSPD AVLTTCRFIS MYGMSDLYGC HRRGVIKAER  120
RERRASVPHS SHTHTRLQEH ATPPLYKPLS LSHSFFVSPK IVNLIIHGRC QSDVVLPPTR  180
LPILPLRGAA PLLLPLPQEH RRLRLRRHGY DLIKELDLYD RDPFDLPDYA CYSYGRGGRR  240
RHWFCYTVRV LKEWRARSGY WRRKGRVRDV VGGGGGGKAV LGRRSSFVFY LGNSPKTAVR  300
TDWVLYQYAQ VDHLQVAYLS LVLGLFDNFN LDEGVLSGVR TMLDDLKGLV SAASFVLCRV  360
FVRSQGGTNI SENALSSCAE ETVSTVRHIG IQHDGFYTPH IVPEIDGDKS VPRNTDKSKD  420
QMRPETEVDK QVETRLVSSI QTNGQVPLLS VSNPVLLDGL SSEHLLSRIE GDFIELDDLI  480
D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291091.11e-144PREDICTED: NAC domain-containing protein 72-like
RefseqXP_011458921.11e-144PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A2P6Q0J51e-130A0A2P6Q0J5_ROSCH; Putative transcription factor NAM family
STRINGXP_004291091.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-07NAC domain containing protein 47