PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000096.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 195aa    MW: 21418 Da    PI: 8.4716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000096.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.6e-16125171455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  FANhyb_rscf00000096.1.g00003.1 125 VHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 171
                                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-19118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-16124175No hitNo description
Gene3DG3DSA:4.10.280.101.7E-19125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-14125171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MADLYGTPPD SEEMSNILSH LLHHGGGSPF KPSSYTHLLN SSAPPPSHEL LARSADRSDS  60
DRPSDSGGYF VDSDANTSKK KGRRVSSEND LGDVSCDSEG PEAPKVPLNP APPRSLSKRS  120
RAAEVHNLSE KRRRSKINEK MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQVRLFS  180
LLNINVLRAV ALDTF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458924.11e-113PREDICTED: transcription factor SPATULA-like
TrEMBLA0A2P6Q0L51e-100A0A2P6Q0L5_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292809.11e-107(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-23bHLH family protein