PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000080.1.g00019.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 744aa MW: 85949.6 Da PI: 7.0047

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000080.1.g00019.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.4e-21	121	212	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkw 76 ++Y ++A++ GFsvrk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w FANhyb_rscf00000080.1.g00019.1 121 EYYGNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKLTGDHHRDRKSVRCGCDAKMYLSKEVvdgVSQW 198 59******************8888.****************************************99867789 PP FAR1 77 evtkleleHnHela 90 v ++++ HnHel FANhyb_rscf00000080.1.g00019.1 199 FVVQFSNVHNHELL 212 ************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-19	121	212	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.6E-19	345	435	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.817	616	651	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-5	625	650	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-4	626	653	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MRQGKLTLSF TVCSSINYRV KPIRYNGLGS MLHHGRKKRP KDKHARPINI SAAPLHNSRG 60 TRSAVEEDEQ AYKGLSSPAF TGDSEETSLA AQLVKNDTST SEAMVSPYVG MVFKNDDAAF 120 EYYGNFARRN GFSVRKERSR LSPQLGIYKR DFVCYRSGFA PAKKKLTGDH HRDRKSVRCG 180 CDAKMYLSKE VVDGVSQWFV VQFSNVHNHE LLEDDQVRLL PAYRKIREAD QERILLLSKA 240 GFPIQRIVKV LELEKGIQGG QLPFLERDVR NFVQNRKKVV QENDALITEK RENDTLELLE 300 ACKVTKEADE DFVYDFTVDE NDKVEHIAWS YGHSVEAYTM FGDAVYFDTM YQSITYGMLF 360 GAWLGIDNHG RTVFFGCVLL QDETPRSFSW ALQTFVRFMR GRWPQTIITD LDPGLRDAIT 420 SKLPDSKHVI SLWNIFPKVS SWFSVSLGSR YAEFRSELDV LYRVESTEDF ELQWNQMISI 480 YGLSTDKHIT LLHSFRASWA LCYMRGCFVA RMGTTDYLKS IEAFLKGVFS TQTCLRSFFE 540 QVGISASFQN QACREMQYMH TKTCIPIEEN ARSILTPFAF NALQHELVLA MQYAVSEMPN 600 GSCIVRHFKE IDGERLVIWI PEDEHVHCSC KEFESSGLLC RHSLRVFILK NYFHLPDKYY 660 LNRWRRETSL DFYDPQIAQN CDDEWYQHYQ CLAETLFTES SLTKERSEYV QREVTTHLTR 720 ILNEVRNMPE SEGVAMDLTF SPAG

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MRQGKLTLSF TVCSSINYRV KPIRYNGLGS MLHHGRKKRP KDKHARPINI SAAPLHNSRG  60
TRSAVEEDEQ AYKGLSSPAF TGDSEETSLA AQLVKNDTST SEAMVSPYVG MVFKNDDAAF  120
EYYGNFARRN GFSVRKERSR LSPQLGIYKR DFVCYRSGFA PAKKKLTGDH HRDRKSVRCG  180
CDAKMYLSKE VVDGVSQWFV VQFSNVHNHE LLEDDQVRLL PAYRKIREAD QERILLLSKA  240
GFPIQRIVKV LELEKGIQGG QLPFLERDVR NFVQNRKKVV QENDALITEK RENDTLELLE  300
ACKVTKEADE DFVYDFTVDE NDKVEHIAWS YGHSVEAYTM FGDAVYFDTM YQSITYGMLF  360
GAWLGIDNHG RTVFFGCVLL QDETPRSFSW ALQTFVRFMR GRWPQTIITD LDPGLRDAIT  420
SKLPDSKHVI SLWNIFPKVS SWFSVSLGSR YAEFRSELDV LYRVESTEDF ELQWNQMISI  480
YGLSTDKHIT LLHSFRASWA LCYMRGCFVA RMGTTDYLKS IEAFLKGVFS TQTCLRSFFE  540
QVGISASFQN QACREMQYMH TKTCIPIEEN ARSILTPFAF NALQHELVLA MQYAVSEMPN  600
GSCIVRHFKE IDGERLVIWI PEDEHVHCSC KEFESSGLLC RHSLRVFILK NYFHLPDKYY  660
LNRWRRETSL DFYDPQIAQN CDDEWYQHYQ CLAETLFTES SLTKERSEYV QREVTTHLTR  720
ILNEVRNMPE SEGVAMDLTF SPAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293388.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2P6Q222	0.0	A0A2P6Q222_ROSCH; Putative transcription factor FAR family
STRING	XP_004293388.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]