PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000078.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 472aa    MW: 52002 Da    PI: 7.3803
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000078.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-1779123147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
  FANhyb_rscf00000078.1.g00008.1  79 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 123
                                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1673129IPR009057Homeodomain-like
PROSITE profilePS5129421.57374128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-976126IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1677126IPR006447Myb domain, plants
SMARTSM007172.8E-1378126IPR001005SANT/Myb domain
PfamPF002499.9E-1579122IPR001005SANT/Myb domain
CDDcd001672.44E-1181124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MLVFGWLVIS YKFLQDYFAS ELNCDQSEAT GSNASLAVGN CSPKGDAQSK LVTELQDFSS  60
FGNDQALKVR KPYTITKQRE KWTEEEHQKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA  120
QKFFSKVAKE LPGTGEGSLK PIEIPPPRPK RKPMHPYPRK HNGSPERRSP SPNFSVAEKG  180
QESPTSVLSV PGSDIIGSPA LEQYNRSRPS TSCTTDMRSA NLSHVEKEND YATSSPSTEE  240
AKETMPHVDS TLDKPLSVVQ KDASASGCTS TTEGDAGRVG TSMSIKLFGR TVLVSDLHKQ  300
SSSGTKDCTS SIYMAKQENH ESESGKFGEP LQWDRSDTRL SLGGLDCNWN SLACGLTINR  360
VGQQDESPKS VPANSDAPPP LPWWVNLPFC QVVCVDSRVD ELSKQNERSC AGSNDGLVTS  420
IDSVCEEPRS VEPCNSRKGF VPYKRCLADT NRNSSVIVSE EKRDRQRARV CS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464451.10.0PREDICTED: protein REVEILLE 7-like isoform X1
TrEMBLA0A2P6P1K80.0A0A2P6P1K8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004299482.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-60MYB_related family protein