PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000071.1.g00014.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 1961aa MW: 215147 Da PI: 9.7031

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000071.1.g00014.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	1834	1855	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ FANhyb_rscf00000071.1.g00014.1 1834 CQTFEETGSCPQGPNCKLHHPK 1855 *****************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.15	1724	1753	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.057	1726	1752	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1	1753	1777	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.521	1757	1778	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.46	1779	1805	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.089	1779	1804	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.038	1806	1827	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.55	1806	1832	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.432	1828	1856	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.2	1833	1855	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1961 aa Download sequence Send to blast
MDLPQYLHHH PRYASPSSSS DPPNYPNYPH RNNNNNYHHH RHHSPPSPPP LRSQSPSASY 60 KPLPPPPPPP CPQRTFSPRP IDSDHPQRTF SPRSNHRPPP LDSDRPRHRL YIDYRDRSRH 120 YSPRDYDREL HKPYRRDPDG ARFRPEYEER DSRRVDDGYR RGASNHETAS FRDSGSGCYD 180 ESAYEELLRS GRRYEAYEIQ RWGLEREEDL YDPFELDEHD DEADRIVSEK REYYNGSESG 240 RSSSSSASRW KQQIQKKSVL LRLQTPKPRE RNYSGYFDSS GSGGAFRGKE QYKYEYLGHG 300 RKDAVDEERL GGGGGGEERG EEQRGGSSPM DLDVSFKSNS LVAKTVGTRD EKRGSGSDSD 360 MDCSESPPAQ RIEEVVNVDT LGLVSNKTSS CPEKDTMRLK GVVTSSGMNS LLCSVVTDDA 420 FVKSEVETTA KGKSLHEQGK EVGSGTSQKS SPNVSKKMKV VKKTVVKKTV KKVANPTSQP 480 KGKLDEPRTS SVHSLSAGTD KKVEASLPNV VSGRKDAEDE ERRGGGGGGE QRGGEQRGGS 540 SPLDLDVSFK SNSLVAKTVG TRDDKKGSGS GSGSDMDCSE SPPAQRIEEV VKVDTLGLVS 600 NKTSSSPEKD TMRLKGVVTS SGMNSQLCSV VTDDAFAKSE VETTAKGKSL HEEGKEVGTS 660 QKSSPNVSKK MKVVKKTVVK KVKKVANPTS QPKGKLDEPG TSSVHSLSAG TGKGEIFSIS 720 DPCPNDLCVL PVDKKVEASL PNVVSDEEST VLNSCGKNAG NNSNANLGSS SPEEINPDQN 780 VDTPVKGLIT VSNSNINVTD SIRVATCPLT GVEDVSKSIC QSGDSLAVDE VVRKESSETM 840 LVVESDFTSG FLNSDKTHGT MNVKGSEHGA EITSEKPSHQ EISVPDVCTV DAVSEQPCSY 900 QLPTSLQNGG VVEELPKAIS SVENNMAVGL SSSGETKAVR SKIGRRTRWD SDEVYVKKDK 960 SITVSNSFGK QPSPECASRS FEICAIEISP NIPKSVGDTK SATPMIQKKR KVKTQLDFSR 1020 VSKTIVDPVG VSVRKNALDS AASSFLKDPS HAEVSVSGVQ KLDMGSQPSN DGISVSNGKS 1080 SVNGFCDTKL SETKTNLTLD NVTEGHQSVT GKTVPLKLQE SKKTSHGLHL LSAESALKSQ 1140 LGQATHKIVP GHPYPTFTTS QKTTSSTHIS KPRTWHRNAN SSASPLHAST LPPQRQLPQR 1200 NGKFESNSYV RKGNTLVRRP APVAAVPQSS QGLNSSVYQL NISGIDGSKK NAGSDGRVDI 1260 KNPSSLMRTG KIIAPSDRPT APLPSEVKMY TSAAISLGTP SQVAEPLLSD FFGTKSDPMN 1320 CSDMKDAEGS VKDLLATSDP PEHHSGPVTN SHDGSLASSN VKKVIYVKRK LNQLVASSNP 1380 SDLSVHNADN NQPSDGYYKK RKHQLIRSSL ESNGKDTVLP TDNLNSGVQK ALKVIPSRTF 1440 NKKRSLKAVA RTGKKNSLVW TPSGTQSSNN NGSSYDHQKV LPHLFPWKRA RSWRTVMQTQ 1500 ASNFNYSSSS TISKKLLLSR MRDTVYTRST HGFSLRKYKV LSVGGSSLKW SKSIESRSKK 1560 VNEEATQAVA EVAKKKREHN GATCTSSGLK IRNSPGKRIF RIGSVRYKMD PSRRTLQRIS 1620 GGLLFLLLLH IDVFLSSSET FNLGEMDDDS SNSAVLNPEK DAKRSYVPRR LVIGNDEYDS 1680 LSYSSKYVRI GNGNQLVRDP KKRTRILASE RVRWSLHTAR QRLAKKRKYC QFFTRFGKCN 1740 KDDGKCPYIH DSSKIAVCTK YLNGLCSNPN CKLTHKVIPE RMPDCSYYLQ GLCTNKNCSY 1800 RHVNVNPKAS TCEGFLKGYC ADGNECRKKH SYVCQTFEET GSCPQGPNCK LHHPKKRTKG 1860 KIKKRSREHK NGWGRYFIAK DVRVSEPVTA SAKHREQNGD DIFGNDFISI NVSDEEAGES 1920 NNPPEQTTFY DSGPSDLDLD DLDELIKPIR LLEKMKKTNV L

Sequence ? help Back to Top

Protein Sequence Length: 1961 aa Download sequence Send to blast

MDLPQYLHHH PRYASPSSSS DPPNYPNYPH RNNNNNYHHH RHHSPPSPPP LRSQSPSASY  60
KPLPPPPPPP CPQRTFSPRP IDSDHPQRTF SPRSNHRPPP LDSDRPRHRL YIDYRDRSRH  120
YSPRDYDREL HKPYRRDPDG ARFRPEYEER DSRRVDDGYR RGASNHETAS FRDSGSGCYD  180
ESAYEELLRS GRRYEAYEIQ RWGLEREEDL YDPFELDEHD DEADRIVSEK REYYNGSESG  240
RSSSSSASRW KQQIQKKSVL LRLQTPKPRE RNYSGYFDSS GSGGAFRGKE QYKYEYLGHG  300
RKDAVDEERL GGGGGGEERG EEQRGGSSPM DLDVSFKSNS LVAKTVGTRD EKRGSGSDSD  360
MDCSESPPAQ RIEEVVNVDT LGLVSNKTSS CPEKDTMRLK GVVTSSGMNS LLCSVVTDDA  420
FVKSEVETTA KGKSLHEQGK EVGSGTSQKS SPNVSKKMKV VKKTVVKKTV KKVANPTSQP  480
KGKLDEPRTS SVHSLSAGTD KKVEASLPNV VSGRKDAEDE ERRGGGGGGE QRGGEQRGGS  540
SPLDLDVSFK SNSLVAKTVG TRDDKKGSGS GSGSDMDCSE SPPAQRIEEV VKVDTLGLVS  600
NKTSSSPEKD TMRLKGVVTS SGMNSQLCSV VTDDAFAKSE VETTAKGKSL HEEGKEVGTS  660
QKSSPNVSKK MKVVKKTVVK KVKKVANPTS QPKGKLDEPG TSSVHSLSAG TGKGEIFSIS  720
DPCPNDLCVL PVDKKVEASL PNVVSDEEST VLNSCGKNAG NNSNANLGSS SPEEINPDQN  780
VDTPVKGLIT VSNSNINVTD SIRVATCPLT GVEDVSKSIC QSGDSLAVDE VVRKESSETM  840
LVVESDFTSG FLNSDKTHGT MNVKGSEHGA EITSEKPSHQ EISVPDVCTV DAVSEQPCSY  900
QLPTSLQNGG VVEELPKAIS SVENNMAVGL SSSGETKAVR SKIGRRTRWD SDEVYVKKDK  960
SITVSNSFGK QPSPECASRS FEICAIEISP NIPKSVGDTK SATPMIQKKR KVKTQLDFSR  1020
VSKTIVDPVG VSVRKNALDS AASSFLKDPS HAEVSVSGVQ KLDMGSQPSN DGISVSNGKS  1080
SVNGFCDTKL SETKTNLTLD NVTEGHQSVT GKTVPLKLQE SKKTSHGLHL LSAESALKSQ  1140
LGQATHKIVP GHPYPTFTTS QKTTSSTHIS KPRTWHRNAN SSASPLHAST LPPQRQLPQR  1200
NGKFESNSYV RKGNTLVRRP APVAAVPQSS QGLNSSVYQL NISGIDGSKK NAGSDGRVDI  1260
KNPSSLMRTG KIIAPSDRPT APLPSEVKMY TSAAISLGTP SQVAEPLLSD FFGTKSDPMN  1320
CSDMKDAEGS VKDLLATSDP PEHHSGPVTN SHDGSLASSN VKKVIYVKRK LNQLVASSNP  1380
SDLSVHNADN NQPSDGYYKK RKHQLIRSSL ESNGKDTVLP TDNLNSGVQK ALKVIPSRTF  1440
NKKRSLKAVA RTGKKNSLVW TPSGTQSSNN NGSSYDHQKV LPHLFPWKRA RSWRTVMQTQ  1500
ASNFNYSSSS TISKKLLLSR MRDTVYTRST HGFSLRKYKV LSVGGSSLKW SKSIESRSKK  1560
VNEEATQAVA EVAKKKREHN GATCTSSGLK IRNSPGKRIF RIGSVRYKMD PSRRTLQRIS  1620
GGLLFLLLLH IDVFLSSSET FNLGEMDDDS SNSAVLNPEK DAKRSYVPRR LVIGNDEYDS  1680
LSYSSKYVRI GNGNQLVRDP KKRTRILASE RVRWSLHTAR QRLAKKRKYC QFFTRFGKCN  1740
KDDGKCPYIH DSSKIAVCTK YLNGLCSNPN CKLTHKVIPE RMPDCSYYLQ GLCTNKNCSY  1800
RHVNVNPKAS TCEGFLKGYC ADGNECRKKH SYVCQTFEET GSCPQGPNCK LHHPKKRTKG  1860
KIKKRSREHK NGWGRYFIAK DVRVSEPVTA SAKHREQNGD DIFGNDFISI NVSDEEAGES  1920
NNPPEQTTFY DSGPSDLDLD DLDELIKPIR LLEKMKKTNV L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	2e-21	1730	1855	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	2e-21	1730	1855	41	168	Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011459807.1	0.0	PREDICTED: uncharacterized protein LOC101310670
TrEMBL	A0A2P6PXI6	0.0	A0A2P6PXI6_ROSCH; Putative transcription factor C3H family
STRING	XP_004292729.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6103	10	10