PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000068.1.g00012.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 543aa    MW: 59743.1 Da    PI: 6.2588
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000068.1.g00012.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.32.1e-0793184588
                            FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.....dgkw 76 
                                     +++++ GF+++      +++n+ ++kr++ C k  +r   k++   +++r +ra++ tgCk  + +  ++     +gkw
  FANhyb_rscf00000068.1.g00012.1  93 DFSRREGFEITLGGGIVKNKNQDVYKRRLICAKGARRVLGKSReiCSSTRPSRASKITGCKWAISIIASNiaepsQGKW 171
                                     588999*******9999999*************999887777666788999**********999986655555679*** PP

                            FAR1  77 evtkle.leHnHe 88 
                                     ++   +  eHnH+
  FANhyb_rscf00000068.1.g00012.1 172 YIRLGNtPEHNHS 184
                                     **987647****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-593184IPR004330FAR1 DNA binding domain
SuperFamilySSF515693.77E-139201543No hitNo description
Gene3DG3DSA:3.20.20.706.8E-155201524IPR013785Aldolase-type TIM barrel
PfamPF002741.9E-155203543IPR000741Fructose-bisphosphate aldolase, class-I
CDDcd009480205523No hitNo description
PROSITE patternPS001580404414IPR029768Fructose-bisphosphate aldolase class-I active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0006979Biological Processresponse to oxidative stress
GO:0046686Biological Processresponse to cadmium ion
GO:0005739Cellular Componentmitochondrion
GO:0009534Cellular Componentchloroplast thylakoid
GO:0010287Cellular Componentplastoglobule
GO:0004332Molecular Functionfructose-bisphosphate aldolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSSNAEIPSD TQDVLDCLLE DSESEVHHEQ MDNVEIPRID NDVSQYSEGA HQSDRARLEN  60
EHDQDDEENF SSIPNPPSCT YNSYLEAEKD LHDFSRREGF EITLGGGIVK NKNQDVYKRR  120
LICAKGARRV LGKSREICSS TRPSRASKIT GCKWAISIIA SNIAEPSQGK WYIRLGNTPE  180
HNHSAVHASG LANHRRRARN NEVQKTIASP GRGILAIDES NATAGKRLAS IGLDNTEANR  240
QAYRQLLLTT PGLGEYISGS ILFEETLYQS TTDGKKFVDV LREQNIMPGI KVDKGLVPLP  300
GSNNESWCQG LDGLASRSAE YYKQGARFAK WRTVVSVPCG PSALAVKEAA WGLARYAAIS  360
QDNGLVPIVE PEILLDGDHP IERTLEVAEK VWAEVFYFLA ENNVVFEGIL LKPSMVTPGA  420
EHKEKASPEA IAKATLTVLK RRVPPAVPGI MFLSGGQSEV EATLNLNAMN QSPNPWHVSF  480
SYARALQNSV LKAWQGRPEN VEAAQQALLI RAKANSLAQL GRYSADGEAE EAKKGMFVKG  540
YTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5tjs_A1e-12420254318363Fructose-bisphosphate aldolase
5tk3_A1e-12420254318363Fructose-bisphosphate aldolase
5tkc_A1e-12420254318363Fructose-bisphosphate aldolase
5tkl_A1e-12420254318363Fructose-bisphosphate aldolase
5tkn_A1e-12420254318363Fructose-bisphosphate aldolase
5tkp_A1e-12420254318363Fructose-bisphosphate aldolase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a key role in glycolysis and gluconeogenesis. {ECO:0000250|UniProtKB:Q9SJQ9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by oxidative stress (PubMed:12492832). Induced by fructose and sucrose (PubMed:22561114). Doen-regulated by abiotic stresses (PubMed:22561114). {ECO:0000269|PubMed:12492832, ECO:0000269|PubMed:22561114}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299028.10.0PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic
SwissprotQ9ZU520.0ALFP3_ARATH; Fructose-bisphosphate aldolase 3, chloroplastic
TrEMBLA0A2P6R1E90.0A0A2P6R1E9_ROSCH; Fructose-bisphosphate aldolase
STRINGXP_004299028.10.0(Fragaria vesca)
Publications ? help Back to Top
  1. Yamada S, et al.
    Differential expression of plastidic aldolase genes in Nicotiana plants under salt stress.
    Plant Sci., 2000. 154(1): p. 61-69
    [PMID:10725559]
  2. Sweetlove LJ, et al.
    The impact of oxidative stress on Arabidopsis mitochondria.
    Plant J., 2002. 32(6): p. 891-904
    [PMID:12492832]
  3. Ito H,Iwabuchi M,Ogawa K
    The sugar-metabolic enzymes aldolase and triose-phosphate isomerase are targets of glutathionylation in Arabidopsis thaliana: detection using biotinylated glutathione.
    Plant Cell Physiol., 2003. 44(7): p. 655-60
    [PMID:12881492]
  4. Pan D, et al.
    PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
    BMC Bioinformatics, 2003. 4: p. 56
    [PMID:14604444]
  5. Suh MC, et al.
    Comparative analysis of expressed sequence tags from Sesamum indicum and Arabidopsis thaliana developing seeds.
    Plant Mol. Biol., 2003. 52(6): p. 1107-23
    [PMID:14682612]
  6. Wienkoop S, et al.
    Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.
    Rapid Commun. Mass Spectrom., 2004. 18(6): p. 643-50
    [PMID:15052571]
  7. Vidi PA, et al.
    Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.
    J. Biol. Chem., 2006. 281(16): p. 11225-34
    [PMID:16414959]
  8. Ytterberg AJ,Peltier JB,van Wijk KJ
    Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
    Plant Physiol., 2006. 140(3): p. 984-97
    [PMID:16461379]
  9. Devos S, et al.
    A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis.
    Mol. Plant Microbe Interact., 2006. 19(12): p. 1431-43
    [PMID:17153927]
  10. Lee CP,Eubel H,O'Toole N,Millar AH
    Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism.
    Mol. Cell Proteomics, 2008. 7(7): p. 1297-316
    [PMID:18385124]
  11. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
    [PMID:20118269]
  12. Marchand CH, et al.
    Thioredoxin targets in Arabidopsis roots.
    Proteomics, 2010. 10(13): p. 2418-28
    [PMID:20405473]
  13. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  14. Mininno M, et al.
    Characterization of chloroplastic fructose 1,6-bisphosphate aldolases as lysine-methylated proteins in plants.
    J. Biol. Chem., 2012. 287(25): p. 21034-44
    [PMID:22547063]
  15. Lu W, et al.
    Identification and characterization of fructose 1,6-bisphosphate aldolase genes in Arabidopsis reveal a gene family with diverse responses to abiotic stresses.
    Gene, 2012. 503(1): p. 65-74
    [PMID:22561114]