PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000063.1.g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 376aa MW: 41594.6 Da PI: 4.6603 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.7e-10 | 301 | 341 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq FANhyb_rscf00000063.1.g00022.1 301 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 341 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-14 | 290 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.977 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-12 | 296 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-12 | 300 | 345 | No hit | No description |
Pfam | PF00010 | 2.2E-7 | 301 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MESLGVFAEG DQWECFSRLF SNEDQELDFT PHFLGHEGSS FPFQHNEGFN FETQTILCPD 60 PEAGDEMGLT RFNHSFFHSL DTVNSNMHYL PQEDSSGYTA SSDIFTAILN PENYYFGGNS 120 CYTPMSNDMS TSIDVSMTGN VDGNVGSFIP AFSDTGNVCN TGDSGSGRMG ISNDSQAPKE 180 LQLKRMHDAA EEKSNTEDAS ESNPKKKPRL SKDKTKKNNV RPKKSQKASS DAKVKDEDES 240 NAAVDRQSSS SYNSSEDDNA SQETNGAGEV SDPKSSSALN LNGKTRANRG SATDPQSLYA 300 RKRRERINER LRVLQNLVPN GTKVDISTML EEAVHYVKFL QLQIKLLSSD DMWMYAPIAY 360 NGMDIGLDLH KMSPLL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459816.1 | 0.0 | PREDICTED: transcription factor bHLH85-like | ||||
TrEMBL | A0A2P6Q0X6 | 0.0 | A0A2P6Q0X6_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004292754.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33880.1 | 7e-49 | ROOT HAIR DEFECTIVE 6-LIKE 2 |