PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000062.1.g00018.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 713aa MW: 79329.5 Da PI: 4.7536

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000062.1.g00018.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.6e-53	9	143	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra 77 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+++d++k+ePwdLpk ++k++++ew+fF++rd+ky++g+r+nra FANhyb_rscf00000062.1.g00018.1 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPDIDVCKWEPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRA 86 699**********************999.99***********5458899999***************** PP NAM 78 tksgyWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 t++gyWkatgkd++++s+ ++ lvg+kktLvfy+grapkge+t+W+mheyr FANhyb_rscf00000062.1.g00018.1 87 TDAGYWKATGKDRTIKSRqfksaanSTGLVGMKKTLVFYRGRAPKGERTSWIMHEYR 143 *************977666554555*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.94E-60	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	9	167	IPR003441	NAC domain
Pfam	PF02365	6.8E-27	10	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0071470	Biological Process	cellular response to osmotic stress
GO:1900426	Biological Process	positive regulation of defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MAVLSMGSLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPDIDVCKWE PWDLPKLSMI 60 KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAA NSTGLVGMKK 120 TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAYV LCRLFHKPEE KAEVLKYDEV 180 DQPGLSPTTS PDETSSDVVQ ESPTPDMKGG KESEGISKWN DSFDHMTPDT VTMPPIDSYM 240 ASDVEVYGPE ETIFSGEMGF FEPTFDCKIF SPSHTPFDAE LDYVGSPLEF GNHSNGSYFQ 300 DGTCEQDVYL PEVFDEVGNK NYESSLEESQ KNLVVGSEAY LSDSFMLQDI PPENPWLNGA 360 WGYTDAKAAQ HNLDTGARGL SNEQFDTEDL LRKTSFGACQ AEAPASLYDH KPALENIGYS 420 GYSYPDSAVS NILDGSTRLN DVDNHSSDQV GGPKIKIRSR LPQERPNSNF VDQGSANRRL 480 RLAVGNHTRV SNHSKEEDEG HSTITEAREA GQSTSDEWEK VHAIDDEEEV TSRDYSVNND 540 YDLGGKNGIS CETNQPPEPS NSGKPVTRGM ARRIRLAVNG SPGSVANSNV SDTKYGQEDK 600 VKSSITEASE TTEETPHLNE QEVKCHPMRL DANQKIAEEP STTLVDENKK TTEEAATKTR 660 SRTGGDDNLL HSGHIGMSVP SKNRCLNTVF IITVGIPLVL TMFVAFSGIW TSH

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MAVLSMGSLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPDIDVCKWE PWDLPKLSMI  60
KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAA NSTGLVGMKK  120
TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAYV LCRLFHKPEE KAEVLKYDEV  180
DQPGLSPTTS PDETSSDVVQ ESPTPDMKGG KESEGISKWN DSFDHMTPDT VTMPPIDSYM  240
ASDVEVYGPE ETIFSGEMGF FEPTFDCKIF SPSHTPFDAE LDYVGSPLEF GNHSNGSYFQ  300
DGTCEQDVYL PEVFDEVGNK NYESSLEESQ KNLVVGSEAY LSDSFMLQDI PPENPWLNGA  360
WGYTDAKAAQ HNLDTGARGL SNEQFDTEDL LRKTSFGACQ AEAPASLYDH KPALENIGYS  420
GYSYPDSAVS NILDGSTRLN DVDNHSSDQV GGPKIKIRSR LPQERPNSNF VDQGSANRRL  480
RLAVGNHTRV SNHSKEEDEG HSTITEAREA GQSTSDEWEK VHAIDDEEEV TSRDYSVNND  540
YDLGGKNGIS CETNQPPEPS NSGKPVTRGM ARRIRLAVNG SPGSVANSNV SDTKYGQEDK  600
VKSSITEASE TTEETPHLNE QEVKCHPMRL DANQKIAEEP STTLVDENKK TTEEAATKTR  660
SRTGGDDNLL HSGHIGMSVP SKNRCLNTVF IITVGIPLVL TMFVAFSGIW TSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	4	167	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	4	167	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	4	167	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	4	167	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	4	167	15	168	NAC domain-containing protein 19
3swm_B	1e-42	4	167	15	168	NAC domain-containing protein 19
3swm_C	1e-42	4	167	15	168	NAC domain-containing protein 19
3swm_D	1e-42	4	167	15	168	NAC domain-containing protein 19
3swp_A	1e-42	4	167	15	168	NAC domain-containing protein 19
3swp_B	1e-42	4	167	15	168	NAC domain-containing protein 19
3swp_C	1e-42	4	167	15	168	NAC domain-containing protein 19
3swp_D	1e-42	4	167	15	168	NAC domain-containing protein 19
3ulx_A	1e-42	8	170	14	171	Stress-induced transcription factor NAC1
4dul_A	1e-42	4	167	12	165	NAC domain-containing protein 19
4dul_B	1e-42	4	167	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00108	PBM	Transfer from AT4G35580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309509.1	0.0	PREDICTED: uncharacterized protein LOC101295292
TrEMBL	A0A2P6P4B3	0.0	A0A2P6P4B3_ROSCH; Putative transcription factor NAM family
STRING	XP_004309509.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13625	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-123	NAC transcription factor-like 9