PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000062.1.g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 713aa MW: 79329.5 Da PI: 4.7536 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.6e-53 | 9 | 143 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra 77 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+++d++k+ePwdLpk ++k++++ew+fF++rd+ky++g+r+nra FANhyb_rscf00000062.1.g00018.1 9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPDIDVCKWEPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRA 86 699************************999.99***************5458899999********************* PP NAM 78 tksgyWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 t++gyWkatgkd++++s+ ++ lvg+kktLvfy+grapkge+t+W+mheyr FANhyb_rscf00000062.1.g00018.1 87 TDAGYWKATGKDRTIKSRqfksaanSTGLVGMKKTLVFYRGRAPKGERTSWIMHEYR 143 *****************977666554555***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-60 | 4 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.082 | 9 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-27 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MAVLSMGSLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPDIDVCKWE PWDLPKLSMI 60 KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAA NSTGLVGMKK 120 TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAYV LCRLFHKPEE KAEVLKYDEV 180 DQPGLSPTTS PDETSSDVVQ ESPTPDMKGG KESEGISKWN DSFDHMTPDT VTMPPIDSYM 240 ASDVEVYGPE ETIFSGEMGF FEPTFDCKIF SPSHTPFDAE LDYVGSPLEF GNHSNGSYFQ 300 DGTCEQDVYL PEVFDEVGNK NYESSLEESQ KNLVVGSEAY LSDSFMLQDI PPENPWLNGA 360 WGYTDAKAAQ HNLDTGARGL SNEQFDTEDL LRKTSFGACQ AEAPASLYDH KPALENIGYS 420 GYSYPDSAVS NILDGSTRLN DVDNHSSDQV GGPKIKIRSR LPQERPNSNF VDQGSANRRL 480 RLAVGNHTRV SNHSKEEDEG HSTITEAREA GQSTSDEWEK VHAIDDEEEV TSRDYSVNND 540 YDLGGKNGIS CETNQPPEPS NSGKPVTRGM ARRIRLAVNG SPGSVANSNV SDTKYGQEDK 600 VKSSITEASE TTEETPHLNE QEVKCHPMRL DANQKIAEEP STTLVDENKK TTEEAATKTR 660 SRTGGDDNLL HSGHIGMSVP SKNRCLNTVF IITVGIPLVL TMFVAFSGIW TSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-42 | 4 | 167 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 4 | 167 | 15 | 168 | NAC domain-containing protein 19 |
3ulx_A | 1e-42 | 8 | 170 | 14 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-42 | 4 | 167 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-42 | 4 | 167 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309509.1 | 0.0 | PREDICTED: uncharacterized protein LOC101295292 | ||||
TrEMBL | A0A2P6P4B3 | 0.0 | A0A2P6P4B3_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004309509.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13625 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-123 | NAC transcription factor-like 9 |