PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000062.1.g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 226aa    MW: 25538.9 Da    PI: 4.6906
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000062.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.53.5e-181493887
                        trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                    m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf++l+a
  FANhyb_rscf00000062.1.g00002.1  1 MERMGYKRNPKRCKEKWENINKYFKKVKESNKVR-PEDAKTCPYFHELDA 49
                                    7899****************************97.99999********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-12150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MERMGYKRNP KRCKEKWENI NKYFKKVKES NKVRPEDAKT CPYFHELDAL YRKRILGGGS  60
SSSLGNQNIQ QQAPPQPKLD SAAQGTVTNA QQTVAATDQS VNKSGDHSPS LQKNLFGDAP  120
EEAAKKPEDI VKELMGQQQQ QQQHHHQVLN QQGVQQQLVV EDYDRVEEGD SDVNLDQDEE  180
EDEEDEEMDD ESRKMDYKIE FQKQQNTGPS SNGGGNGAPS FLAMVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024175245.15e-92trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2P6P4D71e-90A0A2P6P4D7_ROSCH; Putative transcription factor MYB family
STRINGXP_004309494.12e-85(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-27Trihelix family protein