PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000056.1.g00008.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 347aa MW: 39508 Da PI: 4.7821

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000056.1.g00008.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nra FANhyb_rscf00000056.1.g00008.1 6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRA 83 79**************************.99**********96435566888***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t++gyWkatgkd++v s ++++vg+kktLv+y+grap+g +t+Wvmheyrl FANhyb_rscf00000056.1.g00008.1 84 TRAGYWKATGKDRAVNS-NRRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 ************9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-64	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.971	6	157	IPR003441	NAC domain
Pfam	PF02365	6.0E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLTDSVCGS PSSSLKDSYA LCRIFKKTIQ IPKNNKEEKT IGNTLLNRNI 180 LGKDNSTGIN EGEASRGIEA DQDYENYSNP DYPKFLSDTS SSDLTQGTPT ETGIADDLQA 240 PFASDEANSS ANLYSLGAHG SSDNLFQDTY MPNDTSFQNY QFPYPPLELE DFPMINLAVE 300 MNTLKPQIMD DYISCDKLKD YMNGTLEEIF SLCSSQENNH VALPMQD

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAPMTLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLTDSVCGS PSSSLKDSYA LCRIFKKTIQ IPKNNKEEKT IGNTLLNRNI  180
LGKDNSTGIN EGEASRGIEA DQDYENYSNP DYPKFLSDTS SSDLTQGTPT ETGIADDLQA  240
PFASDEANSS ANLYSLGAHG SSDNLFQDTY MPNDTSFQNY QFPYPPLELE DFPMINLAVE  300
MNTLKPQIMD DYISCDKLKD YMNGTLEEIF SLCSSQENNH VALPMQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-57	1	157	15	168	NAC domain-containing protein 19
3swm_B	1e-57	1	157	15	168	NAC domain-containing protein 19
3swm_C	1e-57	1	157	15	168	NAC domain-containing protein 19
3swm_D	1e-57	1	157	15	168	NAC domain-containing protein 19
3swp_A	1e-57	1	157	15	168	NAC domain-containing protein 19
3swp_B	1e-57	1	157	15	168	NAC domain-containing protein 19
3swp_C	1e-57	1	157	15	168	NAC domain-containing protein 19
3swp_D	1e-57	1	157	15	168	NAC domain-containing protein 19
4dul_A	1e-57	1	157	12	165	NAC domain-containing protein 19
4dul_B	1e-57	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293835.1	0.0	PREDICTED: NAC domain-containing protein 86
TrEMBL	A0A2P6Q807	0.0	A0A2P6Q807_ROSCH; Putative transcription factor NAM family
STRING	XP_004293835.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-110	NAC domain containing protein 20