PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000050.1.g00020.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SBP
Protein Properties Length: 675aa    MW: 75685.4 Da    PI: 6.8775
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000050.1.g00020.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP392.2e-1217474777
                                    SSEEETTT--SS--S-STTTT-------S-- CS
                             SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
                                    s fh +s+fDe+krsCrr+L++hn+rrr+k 
  FANhyb_rscf00000050.1.g00020.1 17 SLFHVVSDFDEGKRSCRRKLERHNNRRRRKP 47
                                    67************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.528146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.85E-101749IPR004333Transcription factor, SBP-box
PfamPF031103.7E-61946IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MCTSNHLSSE AVILLHSLFH VVSDFDEGKR SCRRKLERHN NRRRRKPSDS KLGKESQKEV  60
HVEDGNHDVE AGEDSLQLSS QINEKEELLE SEGGGISTLF SMPNAQNVGS DSVPSVLTPS  120
DTQMDGRKHD SNHSLSPPQS DNKSAYSSMC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA  180
SMPVELEGYI RPGCTILTVF IAMPNFMWMK LLDDPASYLH NFVIVPGMML SGRGNMLVYL  240
NDIIFRVVKD GTSVIKAKVE VRAPKLHYIH PTCFEAGKPM EFIVCGSNLL QPKLRFLVSF  300
SGKYLADNYD PESSHSQIER DSTAGNLDHQ FYKIHVPHTE ATSFGPAFIE VENESGLSNF  360
LPVLVGNKEI CAEMETIQKR LEESLFVRGL SDVSSSGCLL NSCEASSLRH RAFSEIILDI  420
AWLLRKPSSE NVQHIMTSSQ AQRFNHLLNL LIFFKSTTIL EKVLENLKTL MDNVEINNPN  480
SGSIDADMRL LQKYMDHARD ILCQKLQDSG VSQLELESLV HKGDVISQSL SCIQSKQHFP  540
IHTQDTEITV DGKMDVMSGS TSNEKSETLP LLNKKAAMKV NFIKHANCGN SSGELLGFRS  600
RRTFLGFRPT LYVISAAAMC LGICAVVFHP HKVGDLAVTI RRYYFLTLPT PREANDKVHV  660
VTVVDLHCAF VANDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296778.20.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A2P6QXU80.0A0A2P6QXU8_ROSCH; Putative transcription factor SBP family
STRINGXP_004296778.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.11e-172squamosa promoter binding protein-like 7