![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000047.1.g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 130aa MW: 14367.8 Da PI: 6.0759 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.9e-10 | 14 | 36 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W++Ia++++ gRt++++k++w++ FANhyb_rscf00000047.1.g00023.1 14 R-WSKIAKHLP-GRTDNEIKNYWRT 36 5.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.588 | 1 | 42 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.73E-9 | 12 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-8 | 13 | 36 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.19E-9 | 14 | 36 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-13 | 14 | 46 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MSISYPVHAT IYTRWSKIAK HLPGRTDNEI KNYWRTRIQK HIKQGDQSNS QGQSSDGTAD 60 QASTSQVGSS STVGLDAMET TYPLCAPTAS YPATLVQPPA HPNVLPPGDS NQENYWSMED 120 LWSMQLLNGE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468270.1 | 6e-82 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 5e-28 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A0K0MAN2 | 5e-78 | A0A0K0MAN2_FRAAN; Emission of benzenoids II protein | ||||
STRING | XP_004304632.1 | 5e-61 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 5e-22 | myb domain protein 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|