PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000047.1.g00022.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 91aa    MW: 10509 Da    PI: 9.738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000047.1.g00022.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181764148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  FANhyb_rscf00000047.1.g00022.1 17 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 64
                                    79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-251067IPR009057Homeodomain-like
PROSITE profilePS5129422.0691268IPR017930Myb domain
SMARTSM007178.1E-131666IPR001005SANT/Myb domain
PfamPF002492.5E-171764IPR001005SANT/Myb domain
SuperFamilySSF466893.55E-221891IPR009057Homeodomain-like
CDDcd001672.69E-101964No hitNo description
Gene3DG3DSA:1.10.10.606.7E-86891IPR009057Homeodomain-like
PROSITE profilePS512947.9146991IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MDKKPCNSSS QDAEVRKGPW TMEEDLILIN YIANHGEGVW NSLAKSAGLK RTGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IMELHSKWGN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-15129122100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468270.12e-61PREDICTED: myb-related protein 305-like
RefseqXP_024179357.12e-61myb-related protein 305-like
SwissprotP813912e-58MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0K0MAN25e-60A0A0K0MAN2_FRAAN; Emission of benzenoids II protein
TrEMBLA0A2P6S5K05e-60A0A2P6S5K0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304632.15e-61(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-55myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]