PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000043.1.g00012.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BES1
Protein Properties Length: 695aa    MW: 77694.6 Da    PI: 5.3182
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000043.1.g00012.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221432.8e-44782151132
                          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl 76 
                                     gg++r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtty+   +g +p 
  FANhyb_rscf00000043.1.g00012.1  78 GGARRCRPVEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTYPsnnQGPRPA 156
                                     6899*****************************************************************9666667777 PP

                          DUF822  77 ..eeaeaagssas...aspesslqsslkssalaspvesysaspksssfpspssldsislas 132
                                       +  +aa++s+s   +s+ ++++++ ++s  +s ve+    +ks+ +p +s +d   ++ 
  FANhyb_rscf00000043.1.g00012.1 157 gvN--SAAVTSSSsqmVSQPTPVSLKGVTSGYPSSVEHTTDHMKSVFMPGSSPYDLPAINT 215
                                     542..333333331136666667777788999******************99999877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.6E-4080217IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.37E-179254691IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.1E-196255689IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-101261680IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65292306IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65313331IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65335356IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060339347IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008428.5E-6418427IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007507.7E-65428450IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65501520IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65535551IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65552563IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.7E-65570593IPR001554Glycoside hydrolase, family 14
PRINTSPR008428.5E-6573583IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007507.7E-65610632IPR001554Glycoside hydrolase, family 14
PRINTSPR008428.5E-6661675IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008428.5E-6676690IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MATDMQRLIG TSEEDDEEEM DMDVKEEGDG DDEEDGEKNA DATSMMMGVD GGMATSGGNN  60
NRFQQHQQIQ EVGTPGSGGA RRCRPVEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV  120
RADINDVIAA LAREAGWVVL PDGTTYPSNN QGPRPAGVNS AAVTSSSSQM VSQPTPVSLK  180
GVTSGYPSSV EHTTDHMKSV FMPGSSPYDL PAINTADGGD QTQSHPLIGG SMDDVGDKQI  240
VDMPQKLPER DFANTAYIPV YVMLPLGVIN MNCELVDPDG LLKQLRVLKS VNVDGVMVDC  300
WWGIVEGHAP MDYNWNGYRR LFQMVRDLKL KLQVVMSFHE CGGNVGDDVC ITLPHWVAEI  360
GRSNPDIFFT DRAGRRNPEC LSWGIDKERV LRGRTAVEVY FDCMRSFRVE FDEFFQDDII  420
SMIQVGLGPC GELRFPSCTV KHGWRYPGIG EFQCYDQYLL KSLRKAAEAR GHSFWGRGPD  480
NAGSYNSRPH ESGFFCDGGD YDGYYGRFFL NWYSRVLVDH GDRVLSLAKL AFDGTSIAVK  540
LSGIHWWYKT PSHAAELTAG FYNSCNRDGY AAIMTMLKKH GVSLNLVCTQ LPMLDENIDF  600
QEALGDPDGL FWQVLNAAWD VCIPVSSENA LLCHNRVGYN KILDNSKPLT NPDGRHLSSF  660
TYLRLSPILM ERHNFMEFDR FVKRMHGEAV LDLHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-14325768811444Beta-amylase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306787.10.0PREDICTED: beta-amylase 7
RefseqXP_011469023.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A2P6SH930.0A0A2P6SH93_ROSCH; Beta-amylase
STRINGXP_004306787.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]