PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000039.1.g00025.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 306aa    MW: 34048.6 Da    PI: 6.1084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000039.1.g00025.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.5e-15100148153
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                                     s ++GVr +k  g+W+AeIr p+++    r +lg++ taeeA +a++ ar kl
  FANhyb_rscf00000039.1.g00025.1 100 SPFRGVRLRK-YGKWAAEIRNPVKG---GRLWLGTYATAEEASQAYETARSKL 148
                                     679******9.7*********7653...7*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.517101163IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-14101148IPR016177DNA-binding domain
SMARTSM003802.2E-13101166IPR001471AP2/ERF domain
CDDcd000183.98E-19102161No hitNo description
PRINTSPR003673.4E-7102113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-19102149IPR001471AP2/ERF domain
PfamPF008476.7E-9102149IPR001471AP2/ERF domain
PRINTSPR003673.4E-7124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSRPSLNQRN NKSRSCKGRE FDANNMNEDN KVVLTRKVRI MFNDPDATDS SSSSSEQDET  60
MANKKPSKSK RFVRQVLIHM HDSDSGGKWA KTRKRPSSSS PFRGVRLRKY GKWAAEIRNP  120
VKGGRLWLGT YATAEEASQA YETARSKLDE ILSRAAAAST NNNCSVDNIN NTSSSNANQE  180
DLFLLRKATD DPIMSSPVSV LDPAMSTDSI SVHNVGRLQV SLDSSFQLDE ALESLHIDQQ  240
QDVFNFVRHE ELNQLISSIA SSSSSLEELG KHLDGTYCSI DDIKIGGCDD HEHYTSLPDC  300
GFDDLY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309841.20.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A3Q8TBA40.0A0A3Q8TBA4_FRAAN; Transcription factor ERF48
STRINGXP_004309841.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3386222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-21ERF family protein