PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000026.1.g00008.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 339aa    MW: 36334.5 Da    PI: 6.5139
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000026.1.g00008.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10187231554
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  FANhyb_rscf00000026.1.g00008.1 187 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 231
                                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-15180241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-11180236No hitNo description
PROSITE profilePS5088816.526182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15184242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7187231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAGNSPEGLG DDFFEQIMAV PQPYSGGSAS AADSGRGYGD VGSMPMVLQL GSGTGSSSGY  60
RGGGGSVGMG MGMPLGLNLE QGFLGHDRFR DEVERNSNTN NSNNNNNGNS SSWQERDNSV  120
HMTTSLFPAA FGHLQNHSSV RPTPPPPPQP HQQFHSQPAP APTAAVHQPP AIRPRVRARR  180
GQATDPHSIA ERLRRERIAE RMKALQELVP SCNKTDRAAM LDEIVDYVKF LRLQVKVLSM  240
SRLGGAGAVA QLVADVPLSA VEGEGIEGGT NNQQAWEKWS NDGTEQQVAK LMEEDVGAAM  300
QYLQSKALCI MPISLAPAIF RTHQPDATTM VKPESHNSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302053.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227682e-89UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A314YM141e-166A0A314YM14_PRUYE; Transcription factor UNE12-like isoform X2
STRINGXP_004302053.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]