PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000010.1.g00037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 701aa MW: 77128.8 Da PI: 8.1236 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.8 | 2.5e-54 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+++yL +kv++ +++ ++++ vd++k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat+ FANhyb_rscf00000010.1.g00037.1 5 LPPGFRFHPTDEELITYYLGRKVSDVSFTS-QAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATE 82 79*************************999.88***************988999************************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +gyWk+tgkdke+l+ +g lvg+kktLvfykgrap+gekt+Wvmheyrle FANhyb_rscf00000010.1.g00037.1 83 AGYWKTTGKDKEILR-QGVLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 131 **************9.99******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-63 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.197 | 5 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MQENLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YKGRAPRGEK 120 TNWVMHEYRL ENKHHPFKSS ASKEEWVVCR VFQKSIALKK PQQMTSSSPQ SVDSPGETNS 180 MVNEFGDVEL PNFMNNVANS STTGFLSNMS IPQGNNYNII DKAAASGAIL PAAALGSWPS 240 SLLSPSNLSS VNSLLLRALQ LRSSSASATT TATAAWIMSH FGSDHNMNSS NVQASSSSKD 300 QIMDSMPQSQ QHLEQPFNLD SIWLQPRVEN LSGFPWKTSN LEDCLSSKES QKGSQPSVEA 360 CNRLKLIKES DRTEPAASEA DPHPESASHQ SAFPVAFDEC IPFGCQVLIS IVFFRQAQIM 420 LGMVRPPQSM PNIQPVTSQH LQQLVQPTQQ SNTQVAPSLP GLGVQDQPGP SQMQAPARKQ 480 YQNQPTFNLQ SQPMSSYPLQ TQQQPKGHLN PQMTPASLPQ SSQLPNPPAH PHHSSQPPQL 540 HQPQMSSYNQ LQQPLQTSGG HHMPLQPPLP PQPRPSMSNF HHQYPPQMGP NSGYQHPSQS 600 MFHSGTKPPT SVGPSFPLGQ PPLPNHPPPQ SMYQGGGMHL GSEYSNQVGT SMQADRGTWM 660 SGPPESSSVP QLSGPPSLVP GQMPGSQLQL MIFCFVFTVS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 2 | 160 | 17 | 174 | NAC domain-containing protein 19 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5F9N9 | 0.0 | A0A2P5F9N9_TREOI; NAC domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-97 | NAC domain containing protein 58 |