PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000008.1.g00011.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 154aa    MW: 16931.1 Da    PI: 10.2869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000008.1.g00011.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-13555146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                    +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++
  FANhyb_rscf00000008.1.g00011.1  5 KQKWTSEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRN 55
                                    79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.576161IPR017930Myb domain
SuperFamilySSF466894.76E-17258IPR009057Homeodomain-like
SMARTSM007171.6E-8459IPR001005SANT/Myb domain
PfamPF002499.5E-10555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-15556IPR009057Homeodomain-like
CDDcd116601.24E-23656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMSVSG  60
GVGGPREKAK TTRPRDSPVT LFANPTPQTS AAASVKREPS AALLKREPSS APVKREAASS  120
LVKGEPVADD SPTEAKTETK TAPLYDSYIR FLCF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287581.11e-100PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A2P6RKC29e-83A0A2P6RKC2_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBLF2QKV89e-83F2QKV8_ROSRU; Putative MYB transcription factor
STRINGXP_004287581.11e-99(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-30MYB_related family protein