PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000008.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 734aa MW: 84936.7 Da PI: 7.2811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000008.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2.1e-24	35	123	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 +fYneYA++ GFs+r++ +ng t+rtfvC keg r+ +k++ + +r++r etrt+C a + +k+ + ++k+ v FANhyb_rscf00000008.1.g00001.1 35 DFYNEYARSEGFSIRRNGYAAD-KNGVLTSRTFVCCKEGLRKVDKRD-DLTRNPRGETRTNCGAIMGIKLVRrTSKYSV 111 6************9986665.9999*************999.9*****************999** PP FAR1 79 tkleleHnHela 90 +++++eHnH+l FANhyb_rscf00000008.1.g00001.1 112 YRFSEEHNHPLI 123 ********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-20	35	123	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.9E-32	245	339	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	524	562	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-4	534	558	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-4	537	564	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MEDTVEENND SLERSKEDLK PKFFMEFDSE TAAYDFYNEY ARSEGFSIRR NGYAADKNGV 60 LTSRTFVCCK EGLRKVDKRD DLTRNPRGET RTNCGAIMGI KLVRRTSKYS VYRFSEEHNH 120 PLISQDSVHL MPSHRKITSS DEAFLDLTAN SGLSPKSAFE LMGQQAGGRE SLGFTKVDQK 180 NYLRTVRQKK MIFGEAGYLI EYFSKQMLEN PTFFYEMQLD SEEQITNVFW ADAKMIMDYG 240 IFGDVVSFDT TYKLNEANRP FAVFVGLNHH RQTVIFGAAL MYDETAASFI WLFETFLKAM 300 CGKPPQTFFT DQDAAIAKAI LHVMPGTYHR LCIWHLMQNA VKKVGFLFRD HDEEDESNVF 360 NKFLYQIEEV DEFLSAWESM LDKYEAHDDT WLAATFEIRK KWVHAYVKWT WSAGMQTTQL 420 SESFNASLKG YLKSDLQLPE FFTHFVRMVY DKRYKELEAE YDLLFRIIHC KMEVSILLHA 480 REVYTKAIFK VFQAQFEDSL KSSITKCVSN GEKFIFTVVR DGFFKERLVK REGQFTVSCS 540 CRMFETVGVL CRHCIKVMTE GRETTLIKKI PEQYVLERWT KNARVDNVVQ DMHGQEIVEN 600 PKLKQTSRYR SLCSKFVRLA SRASESEKTY EAVDMEADNL VKLVENMLRV EINGDKEVED 660 EAPNVLVDCS NDVTAVNAKG FKKREATHRG KRRAKGGFEA QLSKNKKKPA QVSKVPKHCD 720 AMDQSHVPSS QQTQ

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MEDTVEENND SLERSKEDLK PKFFMEFDSE TAAYDFYNEY ARSEGFSIRR NGYAADKNGV  60
LTSRTFVCCK EGLRKVDKRD DLTRNPRGET RTNCGAIMGI KLVRRTSKYS VYRFSEEHNH  120
PLISQDSVHL MPSHRKITSS DEAFLDLTAN SGLSPKSAFE LMGQQAGGRE SLGFTKVDQK  180
NYLRTVRQKK MIFGEAGYLI EYFSKQMLEN PTFFYEMQLD SEEQITNVFW ADAKMIMDYG  240
IFGDVVSFDT TYKLNEANRP FAVFVGLNHH RQTVIFGAAL MYDETAASFI WLFETFLKAM  300
CGKPPQTFFT DQDAAIAKAI LHVMPGTYHR LCIWHLMQNA VKKVGFLFRD HDEEDESNVF  360
NKFLYQIEEV DEFLSAWESM LDKYEAHDDT WLAATFEIRK KWVHAYVKWT WSAGMQTTQL  420
SESFNASLKG YLKSDLQLPE FFTHFVRMVY DKRYKELEAE YDLLFRIIHC KMEVSILLHA  480
REVYTKAIFK VFQAQFEDSL KSSITKCVSN GEKFIFTVVR DGFFKERLVK REGQFTVSCS  540
CRMFETVGVL CRHCIKVMTE GRETTLIKKI PEQYVLERWT KNARVDNVVQ DMHGQEIVEN  600
PKLKQTSRYR SLCSKFVRLA SRASESEKTY EAVDMEADNL VKLVENMLRV EINGDKEVED  660
EAPNVLVDCS NDVTAVNAKG FKKREATHRG KRRAKGGFEA QLSKNKKKPA QVSKVPKHCD  720
AMDQSHVPSS QQTQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305953.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004305953.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-134	FAR1-related sequence 5