PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000007.1.g00021.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 281aa MW: 30464.7 Da PI: 5.4767

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000007.1.g00021.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	153	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas....kapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P s ++++ Ka +L + ++YI+sLq FANhyb_rscf00000007.1.g00021.1 153 SHSLAERARREKISERMKILQDLVPGFSdhltNPKNISvIGKALVLDEIINYIQSLQ 209 8***********************777665444444466*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.86E-9	147	213	No hit	No description
SuperFamily	SSF47459	1.07E-14	147	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.307	149	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-14	149	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-7	153	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-9	155	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDPPLINDAS FSNPAAYSLA EIWPFGGEPG GLGLRMGSLG GGLGESSGNR DGSLEESTVT 60 EQSGGGGRKR KDVSSEDESS KIVSTSSADA LKDSSGKRMK LEGARNENGK SKAEVETSSE 120 AGDKRDEQST KPSEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGFS 180 DHLTNPKNIS VIGKALVLDE IINYIQSLQR QVEFLSLKLE AVNSRVNMNP TIEAFPSKDL 240 NAQQFDAAAL LFGSHTPREY AQGSQAEWLH MQVGGSFERT T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299622.1	1e-173	PREDICTED: transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	3e-80	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2P5F690	1e-149	A0A2P5F690_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_004299622.1	1e-172	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]