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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000007.1.g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 25302.8 Da PI: 10.0492 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 16 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky FANhyb_rscf00000007.1.g00013.1 16 RVPWTEEEHKLFLLGLRKVGKGDWRGISRNYVKTRTPTQVASHAQKY 62 789*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.088 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.66E-17 | 14 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-12 | 16 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-10 | 16 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-17 | 16 | 65 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.05E-10 | 18 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MCLRYVVKLP FPWTDRVPWT EEEHKLFLLG LRKVGKGDWR GISRNYVKTR TPTQVASHAQ 60 KYFLRRSNHN RRRRRSSLFD ITTDSVPAIA MEEEQVQYQD NTSHSQQLPP PPPQTESCNP 120 NGFSMMANFP MNVGPAVVQV PTMNPTGNLP LGQGNPGGPS SKLVCPVVHS APHPTRSCDL 180 NLNATADTSP LALNLSLSMN SMESSSRRLP FQAMSSFSKG DTNIISVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00631 | PBM | Transfer from PK23829.1 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299599.2 | 1e-117 | PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 1e-39 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2P6P2B6 | 1e-101 | A0A2P6P2B6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004299599.1 | 1e-131 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4248 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 7e-33 | MYB_related family protein |
Publications ? help Back to Top | |||
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