PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000005.1.g00048.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 940aa MW: 106103 Da PI: 6.4816

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000005.1.g00048.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.6e-24	227	312	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 +Yn+YAk vGF+vrk+ ++sk +g++++r+f+Cskeg+r+++k+ ++ +++r+etrtgC a++ ++++ dgk++v++ FANhyb_rscf00000005.1.g00048.1 227 CYNKYAKLVGFNVRKDWVNRSKVHGQVVSRKFTCSKEGYRRRDKRV-VNVKKHRKETRTGCLAHMIITRQPDGKYRVSH 304 7***************************************9988.999************************* PP FAR1 81 leleHnHe 88 +e++HnHe FANhyb_rscf00000005.1.g00048.1 305 IEEQHNHE 312 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47699	8.25E-11	35	98	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SMART	SM00499	2.2E-7	38	97	IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
CDD	cd04660	3.23E-11	38	97	No hit	No description
Pfam	PF03101	1.7E-21	227	312	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-25	439	533	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MANFKSMISF QTAALLLVVM IGLALVENQI AEAQGGSCMA DLTHLNVCAP FVLPGSDNKP 60 SSDCCSAIQA METTCLCNTL RIAAQIPTQC NLPPLSCGIG NRNPNRTVKA WTLKHTLNLK 120 GGVFTQLNAI CPIGFAHFSR RVCVYRVVQG SMEREEGDLI SIIDETIDFG VETNNSLDLN 180 VEQDCTNSQI VHENGTLSNI SSTNDHSIDA VVKVGTEFES DEHAYSCYNK YAKLVGFNVR 240 KDWVNRSKVH GQVVSRKFTC SKEGYRRRDK RVVNVKKHRK ETRTGCLAHM IITRQPDGKY 300 RVSHIEEQHN HENVNPSTAQ ALPPQRESSI SQAADAELVE GTKDFRTLSK FASESMNKRF 360 RLSEALDNVD IGYANHLQSE RTRDMKKGEV GSLLHYFQRQ HVENPSFFYA LQVDSDDKVC 420 NIFWADDKMV SDYDHFGDVV CLDTVCRTGK NCLPFVQFIG VNHHKQAMIF AAALLYDDTM 480 ESYKWLFQTF LEAMSGKKPK TILTDQDATI VEAINSVLSE TDHHICIWQM YENALKHISP 540 MVKDTESFAN DFKRCIYEHK DEDDFVSAWR DMLDNYDLHQ NDWLKWMFRA REKWAVVYGW 600 NTIFVDMEGG HLVESLFNDL RNYLHSDTTV LQFFKHFERV VDEQRSKERE ASDEMNRCLP 660 RLMGNVVMLK HAIRMGHCLS TEPKHMGQLE NTASHSVLLM IQLSAVVRNL SVGFLCSHAL 720 KVLDHRNIRV LPAKYVLKRW TKDARSGRAR LSDVSTVHDN PKLTVASRYK DLSHRILMLS 780 TRASESGEAF QYAARQLDQV LEGVEKILTL KPGDAQVVTS SSTGTTTFDI EYAENLLDEN 840 AFVNQGENGV KGENEQGSGV LDRAFTGNPI AQGLYTFEAS PANNCMYAQA NATLLQPPNI 900 FPNQHDSPSL LQLFQEPLIN GTYQEPVSEY VCGSPPFNCP

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MANFKSMISF QTAALLLVVM IGLALVENQI AEAQGGSCMA DLTHLNVCAP FVLPGSDNKP  60
SSDCCSAIQA METTCLCNTL RIAAQIPTQC NLPPLSCGIG NRNPNRTVKA WTLKHTLNLK  120
GGVFTQLNAI CPIGFAHFSR RVCVYRVVQG SMEREEGDLI SIIDETIDFG VETNNSLDLN  180
VEQDCTNSQI VHENGTLSNI SSTNDHSIDA VVKVGTEFES DEHAYSCYNK YAKLVGFNVR  240
KDWVNRSKVH GQVVSRKFTC SKEGYRRRDK RVVNVKKHRK ETRTGCLAHM IITRQPDGKY  300
RVSHIEEQHN HENVNPSTAQ ALPPQRESSI SQAADAELVE GTKDFRTLSK FASESMNKRF  360
RLSEALDNVD IGYANHLQSE RTRDMKKGEV GSLLHYFQRQ HVENPSFFYA LQVDSDDKVC  420
NIFWADDKMV SDYDHFGDVV CLDTVCRTGK NCLPFVQFIG VNHHKQAMIF AAALLYDDTM  480
ESYKWLFQTF LEAMSGKKPK TILTDQDATI VEAINSVLSE TDHHICIWQM YENALKHISP  540
MVKDTESFAN DFKRCIYEHK DEDDFVSAWR DMLDNYDLHQ NDWLKWMFRA REKWAVVYGW  600
NTIFVDMEGG HLVESLFNDL RNYLHSDTTV LQFFKHFERV VDEQRSKERE ASDEMNRCLP  660
RLMGNVVMLK HAIRMGHCLS TEPKHMGQLE NTASHSVLLM IQLSAVVRNL SVGFLCSHAL  720
KVLDHRNIRV LPAKYVLKRW TKDARSGRAR LSDVSTVHDN PKLTVASRYK DLSHRILMLS  780
TRASESGEAF QYAARQLDQV LEGVEKILTL KPGDAQVVTS SSTGTTTFDI EYAENLLDEN  840
AFVNQGENGV KGENEQGSGV LDRAFTGNPI AQGLYTFEAS PANNCMYAQA NATLLQPPNI  900
FPNQHDSPSL LQLFQEPLIN GTYQEPVSEY VCGSPPFNCP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024168656.1	0.0	protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A2P6SN05	0.0	A0A2P6SN05_ROSCH; Putative transcription factor FAR family
STRING	XP_008234281.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	9e-85	FAR1 family protein