PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000002.1.g00021.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 176aa MW: 18494.3 Da PI: 10.5609

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000002.1.g00021.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.3e-09	11	47	11	47
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + +++G+g+W++I+r + +Rt+ q+ s+ qky FANhyb_rscf00000002.1.g00021.1 11 QFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 47 688899******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.265	1	52	IPR017930	Myb domain
CDD	cd00167	2.16E-6	4	48	No hit	No description
SuperFamily	SSF46689	2.39E-10	11	53	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-11	11	50	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-7	11	47	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-6	12	46	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MPLQEMDILL QFLLGLEKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR 60 SSIHDITSVD NGEVATIQGP ITGQSNGPAV GLSGSGKSAK QSAAGPLGVG MYGAPSIGQP 120 IGGPLVSAVG TPVNLVGPSP HMAYGVRAPM PPGALVPGAP MNMPPMTYPM PHTAHR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297715.1	1e-116	PREDICTED: transcription factor DIVARICATA
Refseq	XP_011463429.1	1e-116	PREDICTED: transcription factor DIVARICATA
Refseq	XP_011463430.1	1e-116	PREDICTED: transcription factor DIVARICATA
Swissprot	Q9FNN6	4e-64	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2P6R4S9	1e-107	A0A2P6R4S9_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBL	F2QKX9	1e-107	F2QKX9_ROSHC; Putative MYB transcription factor
STRING	XP_004297715.1	1e-116	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4694	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-59	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]