PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon20555500_s.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 167aa    MW: 18466.8 Da    PI: 4.9636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon20555500_s.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17124167248
                               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 
                                       +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++
  FANhyb_icon20555500_s.1.g00001.1 124 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDK 167
                                       8********.**********3...2234******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-20123166No hitNo description
Gene3DG3DSA:3.30.730.105.3E-23123167IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17124166IPR016177DNA-binding domain
PfamPF008474.2E-12124166IPR001471AP2/ERF domain
PROSITE profilePS5103219.783124167IPR001471AP2/ERF domain
SMARTSM003803.7E-15124167IPR001471AP2/ERF domain
PRINTSPR003671.6E-11125136IPR001471AP2/ERF domain
PRINTSPR003671.6E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAVHSVDRNV GAAPEAILEN VWASFIGVDG GNEGTSDTTN MSKAWEELPS LDGREGSLEV  60
LQRLPSLGRW MSMGAEAWEE LLDTRGIPSC HIEKSCGDKL QGNEAAKLAM EEMVERVEKV  120
ATKHYRGVRR RPWGKYAAEI RDSSRKGARV WLGTFETAEE AALAYDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21123167448ATERF1
3gcc_A4e-21123167448ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309329.11e-118PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A3Q8TDJ61e-116A0A3Q8TDJ6_FRAAN; Transcription factor ERF80
STRINGXP_004309329.11e-117(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.15e-35ERF family protein