PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon20430553_s.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 150aa MW: 16201.7 Da PI: 10.3871 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.3 | 6.1e-16 | 7 | 94 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtses 75 +W+++ + +Liea e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k + + FANhyb_icon20430553_s.1.g00001.1 7 CWSESATAVLIEAWGERYLELSRGNLKQKHWKEVADIVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMLAG--AG 83 7*************************************85444455566778*****************999997..45 PP trihelix 76 sstcpyfdqle 86 s++p+f +l+ FANhyb_icon20430553_s.1.g00001.1 84 PSKWPFFAKLD 94 568******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-26 | 5 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010431 | Biological Process | seed maturation |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
GGGREDCWSE SATAVLIEAW GERYLELSRG NLKQKHWKEV ADIVSSREDY GKTPKTDIQC 60 KNRIDTVKKK YKLEKSKMLA GAGPSKWPFF AKLDHLIGAT GKGTPGSGGG PVPPGFMSKN 120 HKIPMGMPVG VRGGGGGVGQ FVPKHLQQLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00356 | DAP | Transfer from AT3G14180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305769.1 | 1e-106 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 2e-60 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2R6QFA1 | 4e-65 | A0A2R6QFA1_ACTCH; Trihelix transcription factor | ||||
STRING | XP_004305769.1 | 1e-106 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-48 | sequence-specific DNA binding transcription factors |