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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon19828183_s.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 116aa MW: 13395.9 Da PI: 7.5055 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.5 | 8.2e-13 | 9 | 85 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmhey 126 k+e+k +yfF++r++ ++t++r r++ sg+W+ + ++v+++ ++ ++g+k+ + + +g + + ++ W+m+ey FANhyb_icon19828183_s.1.g00001.1 9 KEENKTLYFFTHRKRLSPTSTRFDRKVGSGTWSGQY-PRDVFDEedGSVVIGIKREFRYEEGCDDR-HNKAWLMQEY 83 3455678*************************9875.5888887667778**********998887.6789****** PP NAM 127 rl 128 ++ FANhyb_icon19828183_s.1.g00001.1 84 QI 85 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.976 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.29E-13 | 9 | 99 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-7 | 15 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MYGGGESKKE ENKTLYFFTH RKRLSPTSTR FDRKVGSGTW SGQYPRDVFD EEDGSVVIGI 60 KREFRYEEGC DDRHNKAWLM QEYQIVDDDS DIVLCALRKN HRTPQPAQSS SVVGKT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459317.1 | 3e-81 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A2P6QEP2 | 7e-49 | A0A2P6QEP2_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004308530.1 | 5e-27 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17610 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-07 | NAC family protein |