PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon19788725_s.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 86aa    MW: 9595.91 Da    PI: 5.7087
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon19788725_s.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB35.72.1e-11486480
                             NF-YB  4 qdrflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76
                                      + ++lP + v r++k  l + +k      + k+a     e +  fi ++++ a+d c+  kr+tin+dd++ al ++ f
  FANhyb_icon19788725_s.1.g00001.1  4 ETAELPKTIVRRVVKDKLSQCSKadadlnVHKEALTAFSESARIFIHYLSATANDICRGSKRQTINADDVFKALEDIEF 82
                                      56789999999***9999876663333336788888999**************************************99 PP

                             NF-YB 77 edyv 80
                                       ++v
  FANhyb_icon19788725_s.1.g00001.1 83 PEFV 86
                                      8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-23486IPR009072Histone-fold
PfamPF008084.8E-10677IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.0E-18786IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
VVAETAELPK TIVRRVVKDK LSQCSKADAD LNVHKEALTA FSESARIFIH YLSATANDIC  60
RGSKRQTINA DDVFKALEDI EFPEFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291600.11e-57PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A2P6QDP38e-51A0A2P6QDP3_ROSCH; Putative DNA-directed DNA polymerase transcription factor Hap3/NF-YB family
STRINGXP_004291600.15e-57(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-36nuclear factor Y, subunit B11